Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_I23
(1076 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.039
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 30 0.49
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 23 6.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.039
Identities = 17/54 (31%), Positives = 21/54 (38%)
Frame = +1
Query: 589 PXXPGSVAXTXPXPPXPKRRXGXPXPRSXPPTXRAXRAIXXXSPXXPPPPPXPA 750
P + A + P PP + P PRS P T R + PP P PA
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Score = 31.5 bits (68), Expect = 0.21
Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Frame = +1
Query: 589 PXXPGSVAXTXPXPPXPKRRXGXPXPRSXPPTXRAXRAIXXXSPXXPP-------PPPXP 747
P P S + P P G P PP+ + P PP PPP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Query: 748 AYAXXAPXTS 777
A A AP S
Sbjct: 481 APAPAAPVAS 490
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 664 PRSXPPTXRAXRAIXXXSPXXPPPPPXPA 750
P PP+ R A + PPPPP P+
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPS 318
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 30.3 bits (65), Expect = 0.49
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = +1
Query: 637 PKRRXGXPXPRSXPPTXRAXRAIXXXSPXXPPPPPXPAYAXXAP 768
P+RR P PR P A A P PPP P+ AP
Sbjct: 2 PRRRSAAPPPRRAAPARSASTA-AALPPRTMAPPPAPSRVQQAP 44
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 715 SPXXPPPPPXPAYAXXAP 768
+P PPPPP PA A AP
Sbjct: 2 APAPPPPPPAPAPAAAAP 19
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +1
Query: 622 PXPPXPKRRXGXPXPRSXPPTXRAXRAIXXXSPXXPPPPPXPA 750
P P P P P S PP ++ +P PPP P P+
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSG----APSAPPPVPAPS 1070
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Frame = +1
Query: 628 PPXPKRRXGXPX---PRSXPPTXRAXRAIXXXSPXXPPPPPXPAYAXXAPXTS 777
PP PK G P P + PP + PP PA + AP S
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 3.4
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Frame = +1
Query: 589 PXXPGSVAXTXPX---PPXPKRRXGXPXPRSXPPTXRAXRAIXXXSPXXPPPPPXPA 750
P P S P PP P P S PP A P PPPP PA
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP--MPAGPPSAPPPPLPA 1737
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 921 LASPCPXPXPRXPHSXPXLPPXXHXPASXPP 1013
+++P P P P P PP P S PP
Sbjct: 1702 MSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Frame = +1
Query: 589 PXXPGSVAXTXPXP-----PXPKRRXGXPXPRSXPPTXRAXRAIXXXSPXXPPPPPXPA 750
P P +V P P P P G P P PP + P PPPPP PA
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP------GVAGAGPP-PPPPPPPA 784
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 22.6 bits (46), Expect(2) = 6.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 718 PXXPPPPPXP 747
P PPPPP P
Sbjct: 6 PGNPPPPPPP 15
Score = 21.8 bits (44), Expect(2) = 6.6
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +1
Query: 727 PPPPPXPAY 753
PPPPP P +
Sbjct: 10 PPPPPPPGF 18
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 658 PXPRSXPPTXRAXRAIXXXSPXXPPPPPXP 747
P P PP+ A PPPPP P
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.135 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,204,972
Number of Sequences: 5004
Number of extensions: 10607
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 565779688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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