Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I20
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    78   2e-15
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    50   6e-07
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    43   7e-05
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    31   0.21 

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 38/73 (52%), Positives = 44/73 (60%)
 Frame = +3

Query: 306 KGPKVTHKVXFDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXGXXGSXFHRVX 485
           +GPKVT  V FD + G   +G + IGLFGK VPKT E F  LA   +G G  GS FHRV 
Sbjct: 21  RGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVI 80

Query: 486 KNFMXQGWXFYQG 524
            NFM QG    +G
Sbjct: 81  PNFMIQGGDITKG 93



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +1

Query: 445 RGXGXXGAXSTEXLKISXSKXGXFTKXXXXXXRSIYGXRXXXXXFQLXHYGAGWXSMAXA 624
           +G G  G+     +     + G  TK      +SIYG R     F+L H   G  SMA A
Sbjct: 67  KGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANA 126


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 27/63 (42%), Positives = 30/63 (47%)
 Frame = +3

Query: 336 FDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXGXXGSXFHRVXKNFMXQGWXF 515
           FD       +G IV  LF   VPKT   F  L    +G G  GS FHRV   FM QG  F
Sbjct: 6   FDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIPQFMLQGGDF 65

Query: 516 YQG 524
            +G
Sbjct: 66  TRG 68



 Score = 30.7 bits (66), Expect = 0.28
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 445 RGXGXXGAXSTEXLKISXSKXGXFTKXXXXXXRSIYGXRXXXXXFQLXHYGAGWXSMAXA 624
           +G G  G+     +     + G FT+      +SIYG +     F L H   G  SMA A
Sbjct: 42  KGYGYAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANA 101


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 369 TIVIGLFGKXVPKTXEXFFQLAQKPEGXGXX----GSXFHRVXKNFMXQGWXFYQG 524
           TI   LF   VPKT + F  L    E  G      GS FHRV KNFM QG  F +G
Sbjct: 18  TIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRG 73


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 366 GTIVIGLFGKXVPKTXEXFFQLAQKPEGXGXXGSXFHRVXKNFMXQG 506
           G I I L+ +  PK  + F   A   E      + FHR+ KNFM QG
Sbjct: 464 GDISIKLYPEEAPKAVQNFTTHA---ENGYYDNTIFHRIIKNFMIQG 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,596
Number of Sequences: 5004
Number of extensions: 10186
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)