Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_I20
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 67 1e-11
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 65 8e-11
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 60 2e-09
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 54 1e-07
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 52 8e-07
09_06_0359 + 22508900-22509439 49 4e-06
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 46 4e-05
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 33 0.39
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 31 1.6
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 28 8.4
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 67.3 bits (157), Expect = 1e-11
Identities = 40/98 (40%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Frame = +3
Query: 246 LTMALGXLLFXASAXSDX--IPKGPKVTHKVXFDXKXGXXX---IGTIVIGLFGKXVPKT 410
L+ A F +SA +D + K+T+KV FD G +G +VIGL+G VP+T
Sbjct: 55 LSAAHSRARFVSSATADPKEVDLQSKITNKVYFDISIGNPVGKNVGRVVIGLYGDDVPQT 114
Query: 411 XEXFFQLAQKPEGXGXXGSXFHRVXKNFMXQGWXFYQG 524
E F L +G G GS FHRV K+FM QG F +G
Sbjct: 115 AENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKG 152
Score = 34.3 bits (75), Expect = 0.13
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 445 RGXGXXGAXSTEXLKISXSKXGXFTKXXXXXXRSIYGXRXXXXXFQLXHYGAGWXSMAXA 624
+G G G+ +K + G F K +SIYG F+L H G G SMA A
Sbjct: 126 KGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLVHTGPGVVSMANA 185
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 64.9 bits (151), Expect = 8e-11
Identities = 32/67 (47%), Positives = 38/67 (56%)
Frame = +3
Query: 315 KVTHKVXFDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXGXXGSXFHRVXKNF 494
KV K FD + G G IVIGLFG+ VPKT + F L +G G G FHR+ K+F
Sbjct: 63 KVNSKCFFDVEVGGEPAGRIVIGLFGEVVPKTVDNFRALCTGDKGYGYKGCSFHRIIKDF 122
Query: 495 MXQGWXF 515
M QG F
Sbjct: 123 MIQGGDF 129
Score = 31.5 bits (68), Expect = 0.90
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = +1
Query: 445 RGXGXXGAXSTEXLKISXSKXGXFTKXXXXXXRSIYGXRXXXXXFQLXHYGAGWXSMAXA 624
+G G G +K + G F RSIYG F L H G G SMA A
Sbjct: 106 KGYGYKGCSFHRIIKDFMIQGGDFQNNNGTGGRSIYGECFDDENFTLKHTGPGVLSMANA 165
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 60.5 bits (140), Expect = 2e-09
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +3
Query: 315 KVTHKVXFDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXG-------XXGSXF 473
+VTHKV FD + G +V+GLFGK VPKT E F L +G G GS F
Sbjct: 48 EVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAF 107
Query: 474 HRVXKNFMXQGWXFYQG 524
HR+ +FM QG F G
Sbjct: 108 HRIIPSFMIQGGDFTLG 124
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 508 GXFTKXXXXXXRSIYGXRXXXXXFQLXHYGAGWXSMAXA 624
G FT SIYG + F++ H G G SMA A
Sbjct: 119 GDFTLGDGRGGESIYGTKFADENFKIKHTGPGLLSMANA 157
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/78 (41%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 312 PKVTHKVXFDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXG-------XXGSX 470
P VT++V D + IG IVIGL+G VPKT F L EG G GS
Sbjct: 34 PAVTNRVYLDVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSR 93
Query: 471 FHRVXKNFMXQGWXFYQG 524
FHR+ FM QG +G
Sbjct: 94 FHRIIPGFMIQGGDIVRG 111
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 51.6 bits (118), Expect = 8e-07
Identities = 30/71 (42%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +3
Query: 315 KVTHKVXFDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXG-------XXGSXF 473
KVT KV FD G IV+GLFG VPKT E F + +G G G+ F
Sbjct: 37 KVTTKVFFDITINGKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPF 96
Query: 474 HRVXKNFMXQG 506
HR+ FM QG
Sbjct: 97 HRIIPGFMIQG 107
>09_06_0359 + 22508900-22509439
Length = 179
Score = 49.2 bits (112), Expect = 4e-06
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = +3
Query: 327 KVXFDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXGXXG-------SXFHRVX 485
KV FD G G +V+ LF VPKT E F L +G G G S FHR+
Sbjct: 7 KVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHRII 66
Query: 486 KNFMXQGWXFYQG 524
NFM QG F +G
Sbjct: 67 PNFMCQGGDFTRG 79
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +1
Query: 508 GXFTKXXXXXXRSIYGXRXXXXXFQLXHYGAGWXSMAXA 624
G FT+ SIYG R F+L H G G SMA A
Sbjct: 74 GDFTRGNGTGGESIYGDRFADENFKLRHTGPGVLSMANA 112
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 46.0 bits (104), Expect = 4e-05
Identities = 31/79 (39%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +3
Query: 303 PKGPKVTHKVXFDXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLA---QKPEGX--GXXGS 467
P PK V FD G G I + LF VPKT E F Q + G G G
Sbjct: 31 PPNPK-NPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGC 89
Query: 468 XFHRVXKNFMXQGWXFYQG 524
FHRV K+FM QG + +G
Sbjct: 90 QFHRVIKDFMIQGGDYMKG 108
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 32.7 bits (71), Expect = 0.39
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +3
Query: 366 GTIVIGLFGKXVPKTXEXFFQLAQKPEGXGXXGSXFHRVXKNFMXQG 506
G + I L+ K PK F QL EG G+ FHRV K+F+ QG
Sbjct: 22 GPLDIELWPKEAPKAVRNFVQLCL--EGY-YDGTLFHRVIKSFLVQG 65
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 363 IGTIVIGLFGKXVPKTXEXFFQLAQKPEGXGXXGSXFHRVXKNFMXQG 506
+G I ++ K PKT F +L+++ FHR+ K+F+ QG
Sbjct: 18 MGAFTIEMYYKHAPKTCRNFLELSRRGY---YDNVIFHRIIKDFIVQG 62
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 339 DXKXGXXXIGTIVIGLFGKXVPKTXEXFFQLAQKPEGXG 455
D G G IVI L+ VP+T E F L +G G
Sbjct: 31 DVSIGGEIEGRIVIELYASVVPRTAENFRALCTGEKGVG 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,482,540
Number of Sequences: 37544
Number of extensions: 68793
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -