Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_I12
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0028 + 27782072-27782171,27782427-27782620 39 0.006
11_08_0013 + 27629086-27629185,27629441-27629634 39 0.006
08_02_1156 - 24760332-24761530,24762757-24763648 32 0.54
11_01_0545 + 4308167-4308496 31 1.2
02_05_0930 - 32801737-32801936,32802038-32802107 30 2.9
05_03_0244 + 10857139-10857516 29 3.8
11_01_0544 + 4306436-4306762 29 6.6
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 28 8.7
>11_08_0028 + 27782072-27782171,27782427-27782620
Length = 97
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 481 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIAXNNIADLLSK 612
L NCDM +C C+ GF GG+C N C C A N LLSK
Sbjct: 45 LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTNNRFLLSK 91
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +1
Query: 100 SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDXLCRELGFPSGACDGE 279
++ F S++ + + + G + + L NCD C C+ GF G CDGE
Sbjct: 11 AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70
Query: 280 ---QCVCDNFLKT 309
C C + +T
Sbjct: 71 SNDHCCCTDEART 83
>11_08_0013 + 27629086-27629185,27629441-27629634
Length = 97
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 481 LENCDMRECDQSCRRIGFPGGVC---VNGRCKCDIIAXNNIADLLSK 612
L NCDM +C C+ GF GG+C N C C A N LLSK
Sbjct: 45 LVNCDMNKCMSDCQIKGFNGGLCDGESNDHCCCTDEARTNNRFLLSK 91
Score = 33.9 bits (74), Expect = 0.18
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = +1
Query: 100 SILCFVSVLCTIHASVININIFNEGLNTNKTSIKLRNCDFTACDXLCRELGFPSGACDGE 279
++ F S++ + + + G + + L NCD C C+ GF G CDGE
Sbjct: 11 AVFFFTSLMVMATVNFSSGHTTQGGYGEMDSCMVLVNCDMNKCMSDCQIKGFNGGLCDGE 70
Query: 280 ---QCVCDNFLKT 309
C C + +T
Sbjct: 71 SNDHCCCTDEART 83
>08_02_1156 - 24760332-24761530,24762757-24763648
Length = 696
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 247 LGFPSGACDGEQCVCDNFLKTRGSRTKTDNQ 339
LG S CDG+Q VCD +L TRG ++ Q
Sbjct: 652 LGTTSNRCDGDQIVCD-YLSTRGITDESTRQ 681
>11_01_0545 + 4308167-4308496
Length = 109
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 178 NTNKTSIKLRNCDFTACDXLCRELGF-PSGAC 270
+T T I + CD T C CR+LG+ P AC
Sbjct: 56 DTYATCIPVAACDDTGCAIRCRDLGYNPGSAC 87
>02_05_0930 - 32801737-32801936,32802038-32802107
Length = 89
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +1
Query: 490 CDMRECDQSCRRIGFPGGV--CVNGRCKCD 573
CD C +C+R + GG+ CV +CKCD
Sbjct: 44 CDSGLCVANCQR-QYRGGIGQCVGNKCKCD 72
>05_03_0244 + 10857139-10857516
Length = 125
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 475 STLENCDMRECDQSCRRIGFPGGVCVNGRC 564
S+ +C + C +G PG C GRC
Sbjct: 39 SSFYSCSKKSAAAVCLAVGSPGATCCGGRC 68
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +3
Query: 615 CNSRGCDQSCRXIGFPGGVCVXGRC 689
C+ + C +G PG C GRC
Sbjct: 44 CSKKSAAAVCLAVGSPGATCCGGRC 68
>11_01_0544 + 4306436-4306762
Length = 108
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 178 NTNKTSIKLRNCDFTACDXLCRELGF-PSG-AC 270
NT T ++ CD T C CR++G P+G AC
Sbjct: 55 NTYSTCFEVSACDDTGCAIRCRDMGHNPAGSAC 87
>06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 611 FERRSAILLXAIMSHLHRPLT-HTPPGNPIRRHD*SHSRISQFS 483
F ++ +LL A +SH HRP++ T P R+D S + S FS
Sbjct: 950 FLQKQQMLLQAAVSHPHRPISVATTPAWRASRYDISTLQHSSFS 993
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,809,026
Number of Sequences: 37544
Number of extensions: 383825
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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