Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I11
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    35   0.10 
08_01_0982 - 9947192-9947474,9948649-9948950                           30   2.2  
04_04_0009 + 22134160-22134696                                         24   8.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.0  

>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = +3

Query: 561 ASQKSTLKSEVAKPDRTIKIPGRFPPGKLPRALSCFR 671
           AS  ST++  +    RTI IPG FP G +P  LS +R
Sbjct: 203 ASISSTVQELIGLGARTIMIPGNFPTGCVPAYLSAYR 239


>08_01_0982 - 9947192-9947474,9948649-9948950
          Length = 194

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -2

Query: 750 RXEXWGXRHAFPKGRKGGQVSGKRXGVGNRRXHEGAXQGGNGLVSL*SCRVSPPL 586
           + E W       +G  G   SG+  G G+ R   G   GG GL S  +CR + PL
Sbjct: 108 KREKWLGLERLARGATGTSSSGRGDGNGDLRAPSG---GGQGLGSRNTCREARPL 159


>04_04_0009 + 22134160-22134696
          Length = 178

 Score = 24.2 bits (50), Expect(2) = 8.6
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 513 FTVPGLLLAFCSHVLSCVIPLILWITVLPP-LSELIPLA 400
           F+V  LLL  C      ++PL+L     PP +  L+P+A
Sbjct: 100 FSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVA 138



 Score = 22.6 bits (46), Expect(2) = 8.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 690 SGKRXGVGNRRXHEGAXQGGNG 625
           SGK  G G     E A  GG G
Sbjct: 72  SGKSGGGGGSNIREAAASGGGG 93


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 304 NESAN---ARGEAVCVLGALPLPRSLTRCAR 387
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,996,295
Number of Sequences: 37544
Number of extensions: 394526
Number of successful extensions: 1269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)