Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I11
         (916 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC101603-1|AAI01604.1|  212|Homo sapiens SHF protein protein.          33   1.9  
BC101601-1|AAI01602.1|  212|Homo sapiens SHF protein protein.          33   1.9  
AK094391-1|BAC04345.1|  212|Homo sapiens protein ( Homo sapiens ...    33   1.9  
AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens ...    32   3.3  
BC007586-1|AAH07586.1|  233|Homo sapiens SHF protein protein.          31   5.8  

>BC101603-1|AAI01604.1|  212|Homo sapiens SHF protein protein.
          Length = 212

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 537 P*APXP*RASQKSTLKSEVAKPDRTIKIPGRFPPGKLPRALSCFRPLXAYRIPVRPFSPS 716
           P +P P  + + S+ + E   P+++   PGR   G+LP  LS   P  A  + + P SP 
Sbjct: 114 PASPLPEPSLEDSSAQFE--GPEKSCLSPGREEKGRLPPRLSAGNPKSAKPLSMEPSSPL 171

Query: 717 G 719
           G
Sbjct: 172 G 172


>BC101601-1|AAI01602.1|  212|Homo sapiens SHF protein protein.
          Length = 212

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 537 P*APXP*RASQKSTLKSEVAKPDRTIKIPGRFPPGKLPRALSCFRPLXAYRIPVRPFSPS 716
           P +P P  + + S+ + E   P+++   PGR   G+LP  LS   P  A  + + P SP 
Sbjct: 114 PASPLPEPSLEDSSAQFE--GPEKSCLSPGREEKGRLPPRLSAGNPKSAKPLSMEPSSPL 171

Query: 717 G 719
           G
Sbjct: 172 G 172


>AK094391-1|BAC04345.1|  212|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37072 fis, clone BRACE2015412, weakly similar to
           Shb=Src homology 2 protein. ).
          Length = 212

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 537 P*APXP*RASQKSTLKSEVAKPDRTIKIPGRFPPGKLPRALSCFRPLXAYRIPVRPFSPS 716
           P +P P  + + S+ + E   P+++   PGR   G+LP  LS   P  A  + + P SP 
Sbjct: 114 PASPLPEPSLEDSSAQFE--GPEKSCLSPGREEKGRLPPRLSAGNPKSAKPLSMEPSSPL 171

Query: 717 G 719
           G
Sbjct: 172 G 172


>AK092711-1|BAC03955.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35392 fis, clone SKNSH2000716. ).
          Length = 149

 Score = 31.9 bits (69), Expect = 3.3
 Identities = 20/39 (51%), Positives = 20/39 (51%)
 Frame = -1

Query: 559 RQGXGAYGKTPATRPFYGSWPFAGLLLTCSFLRYPPDSV 443
           RQ  G  G   A R F  S P  GLL  CS LR  PDSV
Sbjct: 69  RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106


>BC007586-1|AAH07586.1|  233|Homo sapiens SHF protein protein.
          Length = 233

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 600 PDRTIKIPGRFPPGKLPRALSCFRPLXAYRIPVRPFSPSG 719
           P+++   PGR   G+LP  LS   P  A  + + P SP G
Sbjct: 80  PEKSCLSPGREEKGRLPPRLSAGNPKSAKPLSMEPSSPLG 119


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,752,472
Number of Sequences: 237096
Number of extensions: 2123665
Number of successful extensions: 6627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6580
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)