Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I10
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    30   2.0  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    30   2.0  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    29   4.5  

>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 159   TNAKTKLKIRTKFILPKFYSAGEFKNSNTISFDAN 55
             T+A  ++K + KFI+      GEF ++ +I+FD N
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDEN 12146


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 159   TNAKTKLKIRTKFILPKFYSAGEFKNSNTISFDAN 55
             T+A  ++K + KFI+      GEF ++ +I+FD N
Sbjct: 12112 TSAPGEVKKKKKFIISAISQDGEFSDAESITFDEN 12146


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6b protein.
          Length = 1345

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +1

Query: 79  GIFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWIN 255
           G F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N
Sbjct: 623 GHFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKN 681

Query: 256 QSGSSYSRHRASKIIRKVDFI 318
           +  +  +  +A K  +  + +
Sbjct: 682 EEEARKAAEKAEKAQKMTEML 702


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
           protein Y38E10A.6a protein.
          Length = 1343

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +1

Query: 79  GIFEFSGT-IEFR*NEFCTYFELRLRVGAGSRRGQRCSRAQVEALQEN*ESGTQRSRWIN 255
           G F++ G  I    N    YF +R R+  G++RG+R S +  +   E  + G +++   N
Sbjct: 621 GHFQYIGDKIGLTANFVSNYFTIRKRMSKGAKRGERLSDSDDDD-DEPEDDGEEKNEEKN 679

Query: 256 QSGSSYSRHRASKIIRKVDFI 318
           +  +  +  +A K  +  + +
Sbjct: 680 EEEARKAAEKAEKAQKMTEML 700


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,694
Number of Sequences: 27780
Number of extensions: 197953
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)