Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I09
         (1025 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.20 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.4  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   4.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 831 PXXPPPXXNPPXPRPPXXPHPPXP 902
           P  PPP   PP   PP  P PP P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = +3

Query: 840  PPPXXNPPXPR-PPXXPHPPXP 902
            PPP   PP P  PP  P PP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 913 GGXWGXGGWGXXGGRGXGGFXXGGGXXG 830
           GG  G GG+G   GRG GG   G    G
Sbjct: 460 GGFGGRGGFGGGRGRGRGGARSGNPNRG 487


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 901 GXGGWGXXGGRGXGGFXXGGG 839
           G GG    GG G GGF  GGG
Sbjct: 509 GRGGNYRRGGYGRGGFRRGGG 529


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 831  PXXPPPXXNPPXPRPPXXPHPPXP 902
            P  PPP   PP P+P     PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGV-PPVP 1211


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -2

Query: 913 GGXWGXGGWGXXGGR--GXGGFXXGGGXXG 830
           GG  G GG+G  G    G GGF  GGG  G
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGF--GGGPGG 232


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 828 TPXXPPPXXNPPXPRPPXXPHPP 896
           +P  PPP    P P P   P PP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPP 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.141    0.481 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,532
Number of Sequences: 5004
Number of extensions: 11009
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 535245848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)