Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I08
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    68   2e-12
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    67   4e-12
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    52   8e-08
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    38   0.002
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    34   0.031
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          27   4.6  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    27   4.6  

>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 31/94 (32%), Positives = 52/94 (55%)
 Frame = +2

Query: 134 IQQFIKEAIXXXXXXXXXXXYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQL 313
           ++ F+  A+           YCPYC   + V    K   +V +++  ++G+ IQ  L + 
Sbjct: 4   VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63

Query: 314 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 415
           TG RTVP +FI+   VGG SD +AL++ G+L+ +
Sbjct: 64  TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 32/92 (34%), Positives = 48/92 (52%)
 Frame = +2

Query: 143 FIKEAIXXXXXXXXXXXYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 322
           F+++AI           +CP+CK AK+   K   P K  EL++ ++G+ IQ  L + T  
Sbjct: 8   FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67

Query: 323 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 418
            TVP +F     +GG SD+  L  SG L  M+
Sbjct: 68  STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
 Frame = +2

Query: 197 CPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGG 367
           CPY   AK +     ++  P  V+E+ + +    ++D L+ ++   T+P +F+ G+ +GG
Sbjct: 76  CPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSIGG 135

Query: 368 GSDVKALYESGKLEPML 418
              V+ALY+  KL+  L
Sbjct: 136 SDSVRALYQEEKLQSTL 152


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 13/43 (30%), Positives = 30/43 (69%)
 Frame = +2

Query: 290 IQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 418
           +++ + + + + T+PQ++ING  VGG   + ++++SG+L  +L
Sbjct: 82  LREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 284 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 418
           ++++  L   + + T PQ++I G  VGG   V  + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +3

Query: 189 NLTVLTVSWQKMFLRK*SNQLKL--LS*MNVMMETPFKIISHN*LVSELYLK 338
           N T+ ++S  K F R+  N + +  LS  N  +ETPF  + H+ +VSE +++
Sbjct: 36  NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 512 NLKRK*HFICTPKYKFKYANNNKTI 438
           N K   HF+C    KF+  NN K++
Sbjct: 57  NSKANNHFLCNSPLKFEIFNNEKSV 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,577
Number of Sequences: 5004
Number of extensions: 38753
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)