Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I05
         (1090 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p...    27   6.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.0  

>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 260 HGAHXEPHRGTP*PAAXRPHGSPPVAASXP 171
           +G+H  P+  TP  A     GS P +A+ P
Sbjct: 275 YGSHAAPYASTPSAAVGSSRGSTPASATVP 304


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
 Frame = +3

Query: 501  PAXPTQSPXSNXKXXLNPTXXVLSHPPXXHPXAPXPXXXPYAXRGP--XPPPXXSTSXP 671
            PA P  +P    +    P     + PP      P P   P     P   PPP  ++S P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 79  SAADRHPYTDAXXHPXCXSXDERYCLXRI 165
           S  +RHP+T     P C S DE+  L  +
Sbjct: 87  SVLERHPFTTQTFIPMCRSSDEQAYLIAV 115


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 31/136 (22%), Positives = 39/136 (28%), Gaps = 5/136 (3%)
 Frame = +3

Query: 477 PRFXEAGPPAXPTQSPXSNXKXXLNPTXXVLSHPPXXHPXAP---XPXXXPY--AXRGPX 641
           P+   A PP  P  +P +  +     +   +S+PP   P  P    P   P   A R   
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTST 414

Query: 642 PPPXXSTSXPHRXTLXXXXXXXXXXXXXXXXPXNPRXAPXPXYPPPLHXKXXQPPHXXPX 821
           PP     S P   +                 P  P   P     PPL       P   P 
Sbjct: 415 PPVPTPPSLP--PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472

Query: 822 LTDPXHPXSXXHPITP 869
              P  P     P  P
Sbjct: 473 APAPP-PAPAPAPAAP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,891
Number of Sequences: 5004
Number of extensions: 22614
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 573748416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)