Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_I05
         (1090 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    41   0.001
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    33   0.27 
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    33   0.27 
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    33   0.47 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    27   1.7  
Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   4.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   4.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   4.4  
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    29   7.7  

>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical protein
            T28C6.1 protein.
          Length = 281

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 43/165 (26%), Positives = 48/165 (29%), Gaps = 6/165 (3%)
 Frame = -1

Query: 1051 WGGXWGXX-GXMSXXXXXXXXXXWXXVXGXXXVGXGGRLXMGGXXXXXGXXGXGXXRGRT 875
            WGG  G   G  S               G      GG    GG     G    G  RG  
Sbjct: 105  WGGSQGGSQGGSSGGWGGSSRSDSGSGQGGWGGQQGGNSNAGGWGGSQGGQNGGGGRG-- 162

Query: 874  WDGVMGWXXEXGWXGSVRXGXX--WGGXXXFXWRG--GG*XGXGAXRGXQGXXWXXXXXX 707
                 G   + GW GS   G    WGG       G  GG  G G  +G +   W      
Sbjct: 163  -----GSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGEQGGWGGQGGS 217

Query: 706  XXXXXXXRVXRWGXEVEXXGGGXGPRXA*GXXXGXG-AXGWXXGG 575
                       WG +    GGG G +   G   G G   GW   G
Sbjct: 218  QGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRGGGWGGWG 262



 Score = 29.5 bits (63), Expect = 4.4
 Identities = 24/78 (30%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
 Frame = -1

Query: 955 GXGGRLXMGGXXXXXGXXGXGXXRGRTWDGVMGWXXEXGWXGSVRXGXXWGGXXXFXWRG 776
           G GG+    G        G G   G+   G  G     GW G  R G  WGG     W  
Sbjct: 210 GWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGR-GGGWGG-----WGR 263

Query: 775 GG*XGXGAXR-GXQGXXW 725
           G   G G    G  G  W
Sbjct: 264 GSRWGWGRPSWGGWGRGW 281


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 26/77 (33%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
 Frame = -1

Query: 955 GXGGRLXMGGXXXXXGXXGXGXXRGRTWDGVMGWXXEXG---WXGSVRXGXXWGGXXXFX 785
           G  GR   GG     G  G G   G    G  GW    G   W G+   G   GG     
Sbjct: 41  GGWGRPGWGGGGPGWGRGGGGSGWGGGRGG--GWGNNGGGGNWGGNGGGGNGGGGRGGGG 98

Query: 784 WRGGG*XGXGAXRGXQG 734
             GGG  G G  RG  G
Sbjct: 99  GGGGGRGGGGGGRGGGG 115



 Score = 31.1 bits (67), Expect = 1.4
 Identities = 25/72 (34%), Positives = 27/72 (37%)
 Frame = -1

Query: 949 GGRLXMGGXXXXXGXXGXGXXRGRTWDGVMGWXXEXGWXGSVRXGXXWGGXXXFXWRGGG 770
           GGR   G      G  G G  RG    G  G     GW G+   G  WGG       GGG
Sbjct: 37  GGRSG-GWGRPGWGGGGPGWGRGGGGSG-WGGGRGGGW-GNNGGGGNWGGNGGGGNGGGG 93

Query: 769 *XGXGAXRGXQG 734
             G G   G +G
Sbjct: 94  RGGGGGGGGGRG 105



 Score = 29.1 bits (62), Expect = 5.8
 Identities = 27/97 (27%), Positives = 27/97 (27%), Gaps = 2/97 (2%)
 Frame = -1

Query: 859 GWXXEXGWX--GSVRXGXXWGGXXXFXWRGGG*XGXGAXRGXQGXXWXXXXXXXXXXXXX 686
           GW     W    S   G   GG     W GGG    G  RG  G  W             
Sbjct: 21  GWGPPSPWGFRPSPFFGGRSGGWGRPGWGGGG---PGWGRGGGGSGWGGGRGGGWGNNGG 77

Query: 685 RVXRWGXEVEXXGGGXGPRXA*GXXXGXGAXGWXXGG 575
               WG       GG G     G   G G  G   GG
Sbjct: 78  G-GNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGG 113


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 37/128 (28%), Positives = 39/128 (30%), Gaps = 1/128 (0%)
 Frame = -1

Query: 955 GXGGRLXMGGXXXXXGXXGXGXXRGRTWDGVMGWXXEXGWXGSVRXGXXWGGXXXFXWRG 776
           G GG    GG     G  G G   G  W G  G      W G+   G  WGG        
Sbjct: 34  GWGGNRWGGGG----GPGGWGNNGGGGW-GRGGGRGGGDWGGNNGGGGNWGGNGGGRGDW 88

Query: 775 GG*XGXGAXRGXQGXXWXXXXXXXXXXXXXRVXRWGXEVEXXGGGXGPRXA*G-XXXGXG 599
           GG  G G   G +G  W                  G      GGG G R   G    G G
Sbjct: 89  GGNGGGGRGGGGRG-DWGGNNNGGGGNWGGGGNNDGGWGGNNGGGGGGRGGGGRGGDGRG 147

Query: 598 AXGWXXGG 575
             G   GG
Sbjct: 148 PPGSNGGG 155


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = +3

Query: 477 PRFXEAGPPAXPTQSPXSNXKXXLNPTXXVLSHPPXXHPXAPXPXXXPYAXRGPXPP 647
           P++    PP  P  +P  N     NP   V+  P    P AP P   PY    P  P
Sbjct: 43  PQYAPLPPPPMPAPAPAYNPYPCANPPCIVV-EPMPVAPPAPAPAYNPYPCATPPCP 98



 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
 Frame = +3

Query: 489 EAGPPAXPTQSPXSNXKXXLNPTXXVLSHPPXXHPX-APXPXXXPYAXRGPXPPPXXSTS 665
           E  P A P  +P  N      P   +   P    P  AP P   PYA   P  PP     
Sbjct: 74  EPMPVAPPAPAPAYNPYPCATPPCPLPYIPEPVAPVPAPAPVYEPYACAAPPCPPPTPVY 133

Query: 666 XPH 674
            P+
Sbjct: 134 EPY 136


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 32.7 bits (71), Expect = 0.47
 Identities = 36/131 (27%), Positives = 39/131 (29%)
 Frame = -1

Query: 970 GXXXVGXGGRLXMGGXXXXXGXXGXGXXRGRTWDGVMGWXXEXGWXGSVRXGXXWGGXXX 791
           G    G GG   MGG     G  G G   G   D   G     G  G    G   GG   
Sbjct: 128 GYGGYGGGGYGGMGGGPGGYGMGGYGGGGGGGGD--FGGYGGGGMGGGGYGGGGDGGYGG 185

Query: 790 FXWRGGG*XGXGAXRGXQGXXWXXXXXXXXXXXXXRVXRWGXEVEXXGGGXGPRXA*GXX 611
             + GGG  G G   G  G  +                 +G      GGG GP    G  
Sbjct: 186 GGFGGGGMGGYGGGMG--GGGYGGGGMGGGGYGGGGDGGYGPS-GGYGGGYGPGGGYGMG 242

Query: 610 XGXGAXGWXXG 578
            G G  G   G
Sbjct: 243 GGGGGGGCPNG 253


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = -3

Query: 1076 GSGXXGXCVGGEXGXXGXXERGXX*GWXEGVXXSXGXXXCGXGREAXDGW 927
            G G  G C GG  G  G    G   G   G     G   CG G     G+
Sbjct: 132  GGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGY 181


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = -3

Query: 1076 GSGXXGXCVGGEXGXXGXXERGXX*GWXEGVXXSXGXXXCGXGREAXDGW 927
            G G  G C GG  G  G    G   G   G     G   CG G     G+
Sbjct: 132  GGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGY 181


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 27.1 bits (57), Expect(2) = 1.7
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
 Frame = +3

Query: 471 VLPRFXEAGPPAXPTQS--PXSNXKXXLNPTXXVLS-HPPXXHPXAPXPXXXPYAXRGPX 641
           + P    A PP  P  S  P  N      P    ++ H P   P  P     P +   P 
Sbjct: 462 IAPINANAPPPPGPPSSLLPLINTNAPPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPP 521

Query: 642 PPP 650
           PPP
Sbjct: 522 PPP 524



 Score = 22.2 bits (45), Expect(2) = 1.7
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 753 APXPXYPPPLHXKXXQPPHXXPXLTD 830
           AP P  PPP+      PP   P   D
Sbjct: 535 APTPPPPPPVGMANGGPPPPPPLPLD 560


>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
 Frame = +3

Query: 498 PPAXPTQSPXSNXKXXLNPTXXV-LSHPPXXHPXAPXPXXXPYAXRGPXPPPXXSTSXPH 674
           P   P  +P  N     N T  V  + P    P AP P   P     P PPP  +T    
Sbjct: 223 PKPAPVTAPAPNPPAPENTTAKVETTKPTKAAPPAPTPVPNPVP--SPPPPPANTTVTEE 280

Query: 675 RXTL 686
           + T+
Sbjct: 281 KTTV 284


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +3

Query: 498 PPAXPTQSPXSNXKXXLNPTXXVLSHPPXXHP-XAPXPXXXPYAXRGPXPPPXXSTSXP 671
           PP  PT SP         P     S PP   P  +P     P    G  PPP  + S P
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +3

Query: 498 PPAXPTQSPXSNXKXXLNPTXXVLSHPPXXHP-XAPXPXXXPYAXRGPXPPPXXSTSXP 671
           PP  PT SP         P     S PP   P  +P     P    G  PPP  + S P
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +3

Query: 498 PPAXPTQSPXSNXKXXLNPTXXVLSHPPXXHP-XAPXPXXXPYAXRGPXPPPXXSTSXP 671
           PP  PT SP         P     S PP   P  +P     P    G  PPP  + S P
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 15/51 (29%), Positives = 15/51 (29%)
 Frame = -1

Query: 955 GXGGRLXMGGXXXXXGXXGXGXXRGRTWDGVMGWXXEXGWXGSVRXGXXWG 803
           G  GR   G      G  G G      W G        GW G    G  WG
Sbjct: 680 GGWGRDDFGDNGGWGGNGGGGWGNNDPWGGSRWGGGRGGWGGGGWGGGGWG 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,512
Number of Sequences: 27780
Number of extensions: 173688
Number of successful extensions: 754
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2929426640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)