Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_I04
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.024
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 32 0.096
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 31 0.22
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 31 0.29
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 29 0.90
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 28 1.6
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 2.1
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.7
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 2.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.8
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 6.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.3
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 26 6.3
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 26 6.3
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 26 8.4
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.3 bits (75), Expect = 0.024
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Frame = +2
Query: 149 KMPNKK----NKEIDTNSES-EKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 313
++P KK +++ +++SES E+E+++ SE+DS+ + E E +++ E + E+SD
Sbjct: 68 EVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESD 127
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 32.3 bits (70), Expect = 0.096
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 176 IDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHG 322
+ +++ E+E++ E + +FD +G E+E + D +G D D G
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEG 218
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 158 NKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 304
++ +E D E ++E++ + D D + DG+ GE + + E E
Sbjct: 184 DEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEE 232
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 31.1 bits (67), Expect = 0.22
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 603 ELITYILADDSQXTGLVINERILXXPASD*RTLFASLQTELEXAHRKTMLYXFXYLIWIS 782
EL + + GL++NER++ P ++ L E++ A + Y F + + +S
Sbjct: 168 ELQKLLEPNSGSQVGLIVNERLINMPVQVIPPMYNMLLEEMQWAINENEPYNFTHYLLLS 227
Query: 783 XXYPTGES 806
Y ES
Sbjct: 228 RTYTEIES 235
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 143 FAKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 253
F+K+PN K ++ D+ S DS + +D D+ N
Sbjct: 29 FSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSN 65
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 29.1 bits (62), Expect = 0.90
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 173 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFHG 322
E+D + ++K++D + ++++ ++D N E++ + D E ED G
Sbjct: 84 EVDNVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEEDEEDEDESGGG 133
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 296 YVLRNQPVALFHRHSCRLNQNQNLFRCL 213
Y+LR+ P + F+R+S + N N FR L
Sbjct: 18 YILRHLPFSNFNRYSTASHDNVNAFRLL 45
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 158 NKKNKEIDTNSESEKEQDSGSEKDSD 235
+ NKE N+E KEQ+ E D D
Sbjct: 163 HSNNKEAHPNTEENKEQEDNEEDDED 188
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 188 SESEKEQDSGSEKDSDFDSD 247
SESE+E+ S SE D D D D
Sbjct: 239 SESEEEESSESESDEDEDED 258
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +2
Query: 173 EIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQAD 283
+I T+++ +K ++ G E SD D DGNY+ K L+++
Sbjct: 22 DIATDNQKDKHENVG-ENVSDED-DGNYIASKLLESN 56
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/55 (21%), Positives = 24/55 (43%)
Frame = +2
Query: 149 KMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 313
K+ KK D++SES + S+ + + V + E + + + DS+
Sbjct: 155 KIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSE 209
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 194 SEKEQDSGSEKDSDFDSDG-NYVGEKELQADFEGRN 298
+E + GSE DSD DSD + V +LQ + RN
Sbjct: 434 NEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRN 469
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +2
Query: 143 FAKMPNKKNKEIDTN----SESEKEQDSGSEKDSDFDSDGNYVGEKELQADFEG 292
F PN K+ ++ + S+S K S E +S FD G + + +ADF G
Sbjct: 85 FLAPPNDKDSPVNQSPWKRSDSSKRSSSQDEFESLFDRYGQLSLKDDGKADFRG 138
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 167 NKEIDTNSESEKEQDSGSEKDSDFDS 244
N ++ + ES +++DS S+ DS+ +S
Sbjct: 90 NSSLENDEESSQQEDSSSKSDSEEES 115
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +2
Query: 140 IFAKMPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGNYVGEKELQAD 283
I A+ PN K+ K DS E D++ S GNY + EL D
Sbjct: 219 IGAQNPNNKSDYEKEYMALRKRYDSNEEPDTEALSQGNYT-QFELSID 265
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 152 MPNKKNKEIDTNSESEKEQDSGSEKDSDFDSDGN 253
M KK+K + K +S S+ DSD DSD +
Sbjct: 58 MNKKKSKVCCIFHKQRKFDESSSDSDSDSDSDSS 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,393
Number of Sequences: 5004
Number of extensions: 40885
Number of successful extensions: 175
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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