Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_I03
(921 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.008
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 34 0.033
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.075
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.100
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.100
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.30
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.70
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 1.2
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 1.2
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 29 1.2
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 2.1
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 28 2.1
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 6.5
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 6.5
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 26 8.6
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 26 8.6
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/40 (47%), Positives = 19/40 (47%)
Frame = -3
Query: 880 GGGXXGVGXEKGGXGGXXPXXGGGXGXEXXGGGXGGXXGG 761
GGG G GG GG GGG G GGG GG GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLG--GFGGGPGGFGGG 264
Score = 35.5 bits (78), Expect = 0.011
Identities = 21/53 (39%), Positives = 21/53 (39%)
Frame = -3
Query: 877 GGXXGVGXEKGGXGGXXPXXGGGXGXEXXGGGXGGXXGGXXEXARXGGRXXGP 719
GG G G GG G GGG G GGG GG GG G GP
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGG--FGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 30.7 bits (66), Expect = 0.30
Identities = 24/61 (39%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
Frame = -3
Query: 880 GGGXXGVGXEKGGXGGXXPXXGGGXGXEXXG------GGXGGXXGGXXE-XARXGGRXXG 722
GGG G G GG GG P GG G G GG GG GG GG G
Sbjct: 187 GGGFGGFG---GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 721 P 719
P
Sbjct: 244 P 244
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -3
Query: 880 GGGXXGVGXEKGGXGGXXPXXGGGXGXEXXGG 785
GGG G G GG GG GGG G G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = -3
Query: 850 KGGXGGXXPXXGGGXGXEXXG-GGXGGXXGGXXEXARXGG 734
+G GG GGG G G GG GG G E GG
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGG 222
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 33.9 bits (74), Expect = 0.033
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -3
Query: 880 GGGXXGVGXEKGGXGG-XXPXXGGGXGXEXXGGGXGGXXGGXXEXARXGGR 731
GG G G +GG GG GGG GG GG GG +R G R
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFR 191
Score = 33.5 bits (73), Expect = 0.043
Identities = 18/48 (37%), Positives = 20/48 (41%)
Frame = -3
Query: 874 GXXGVGXEKGGXGGXXPXXGGGXGXEXXGGGXGGXXGGXXEXARXGGR 731
G G G +GG GG GG GG GG GG +R G R
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFR 183
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 32.7 bits (71), Expect = 0.075
Identities = 20/49 (40%), Positives = 21/49 (42%)
Frame = -3
Query: 877 GGXXGVGXEKGGXGGXXPXXGGGXGXEXXGGGXGGXXGGXXEXARXGGR 731
GG G +GG G GGG G GGG GG GG R G R
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGG-ARGGGRGGARGG--RGGRGGAR 54
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -3
Query: 850 KGGXGGXXPXXGG-GXGXEXXGGGXGGXXGGXXEXARXGGR 731
+GG GG GG G GGG GG GG AR GGR
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGAR-GGR 47
Score = 31.5 bits (68), Expect = 0.17
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -3
Query: 877 GGXXGVGXEKGG-XGGXXPXXGGGXGXEXXG-GGXGGXXGGXXEXARXGGR 731
GG G +GG GG GGG G G GG GG GG GGR
Sbjct: 16 GGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG--RGGSSGGR 64
Score = 30.3 bits (65), Expect = 0.40
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = -3
Query: 913 GXXXGXXXXXXGGGXXGVGXEKGGXGGXXPXXGGGXGXEXXGGGXGG 773
G G GGG G +GG GG GG G GG GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGR--GGAKGG 70
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = -3
Query: 880 GGGXXGV-GXEKGGXGGXXPXXGGGXGXE-XXGGGXGGXXGG 761
GGG G G +GG G GG G GG GG GG
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.100
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = +3
Query: 723 PXXLPPXRAXSSXPP--XXPPXPPPXXSXPXPP 815
P PP R S+ PP P PPP S P PP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 735 PPXRAXSSXPPXXPPXPPPXXSXPXPP 815
PP PP PP P S P PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 727 PXSPLXXRXXPXPPXXPPXPXRXLRXPPP 813
P P P PP PP P PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.100
Identities = 18/51 (35%), Positives = 18/51 (35%)
Frame = +2
Query: 728 PPPPXXXGLXRAPXXXPXXPXXXFXPXPPXPXRXPPTXPXFLXPHPXPXPP 880
PPPP AP P P PP P PP P P P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGPPPPPPPP 782
Score = 31.5 bits (68), Expect = 0.17
Identities = 16/47 (34%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Frame = +2
Query: 776 PXXPXXXFXPXP-PXPXRXPPTXPXFLXPHPXPXPPXXXXPXPXXXP 913
P P P P P P PP P P P P PP P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 31.1 bits (67), Expect = 0.23
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +3
Query: 723 PXXLPPXRAXSSXPPXXPPXPPPXXSXPXPPP 818
P +PP PP PP P + P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 720 GPXXLPPXRAXSSXPPXXPPXPPPXXS 800
GP PP + P PP PPP S
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVS 786
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 803 PXPPXPXRXPPTXPXFLXPHPXPXPPXXXXPXPXXXP 913
P PP P PT P P P P P P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +1
Query: 724 PPXSPLXXRXXPXPPXXPPXPXRXLRXPPPXPXXAP 831
PP +P+ PP PP P PPP P P
Sbjct: 752 PPPAPIMG----GPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.30
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 723 PXXLPPXRAXSSXPPXXPPXPPPXXSXPXPPP 818
P PP R S P PP PPP PP
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPP 268
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/62 (30%), Positives = 20/62 (32%), Gaps = 1/62 (1%)
Frame = +2
Query: 731 PPPXXXGLXRAPXXXPXXPXXXFXPXP-PXPXRXPPTXPXFLXPHPXPXPPXXXXPXPXX 907
PPP G AP P P P P PP+ P L P P P P
Sbjct: 391 PPPAIPG-RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449
Query: 908 XP 913
P
Sbjct: 450 PP 451
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = +2
Query: 731 PPPXXXGLXRAPXXXPXXPXXXFXPXPPXPXRXPPTXPXFLXPHPXPXP 877
PP G AP P P P P PP P P P P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAP--PLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.2 bits (55), Expect = 6.5
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 723 PXXLPPXRAXSSXPPXXPPXPPPXXSXPXPPP 818
P LPP A S P P PP S P PP
Sbjct: 428 PPSLPPS-APPSLPMGAPAAPPLPPSAPIAPP 458
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Frame = +3
Query: 753 SSXPPXXPPXPPP-----XXSXPXPPPXXG 827
+S PP PP PPP S P PPP G
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 349 YVPRQFLELCFCTSLEVPVYRLALWYIF 266
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 349 YVPRQFLELCFCTSLEVPVYRLALWYIF 266
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 349 YVPRQFLELCFCTSLEVPVYRLALWYIF 266
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 28.7 bits (61), Expect = 1.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -3
Query: 349 YVPRQFLELCFCTSLEVPVYRLALWYIF 266
++PR L + +C ++++ +Y L WYI+
Sbjct: 32 FIPRLSLTVKYCLAVKLLIYLLYCWYIY 59
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/62 (30%), Positives = 19/62 (30%)
Frame = +2
Query: 728 PPPPXXXGLXRAPXXXPXXPXXXFXPXPPXPXRXPPTXPXFLXPHPXPXPPXXXXPXPXX 907
P PP R P P P PP P PP P P P PP P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP----PPSPASAPPI-PSKAPPIPSSLPPPAQPAAPVK 182
Query: 908 XP 913
P
Sbjct: 183 SP 184
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 762 PPXXPPXPPPXXSXPXPPPXXG 827
PP PP P P + P PP G
Sbjct: 5 PPPPPPAPAPAAAAPAPPLMTG 26
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +3
Query: 723 PXXLPPXRAXSSXPPXX--PPXPPPXXSXPXPPPXXG 827
P PP A P PP PPP + P P P G
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Frame = +3
Query: 735 PPXRAXSSX-PPXX------PPXPPPXXSXPXPPPXXG 827
PP A SS PP PP PPP + P P P G
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +3
Query: 720 GPXXLPPXRAXSSXPPXXPPXPPPXXSXPXPP 815
G +P + S PP PP P P + P P
Sbjct: 342 GNQVMPTPQVQGSRPPPPPPMPAPIYNVPNVP 373
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 285 LLFGIFSEENSLNPAKHFKIQSPKHSRYDRTAINAALSS 169
LLFG+ S+N + + KI S S +T IN+A S
Sbjct: 203 LLFGVKKFITSMNTSSNVKISSDPSSPSTQTTINSAAKS 241
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.2 bits (55), Expect = 6.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +2
Query: 248 FKEFSSENIPKSKPINWDFEAGAKTQLKELS 340
F+ ++++ + +NWDF+ G+KT+ S
Sbjct: 99 FEADVNKDLSSATDMNWDFDMGSKTESNRAS 129
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 738 PXRAXSSXPPXXPPXPPP 791
P R+ SS PP PP P P
Sbjct: 262 PRRSVSSTPPVHPPPPVP 279
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 367 YLECL-AYVPRQFLELCFCTSLEVPVYRLALWYIFGRKLLEPGQTLQN 227
Y+ C VPR F+E+C T+ VP + Y +++L G L N
Sbjct: 169 YIACRQGKVPRTFMEICTLTN--VPKKEIGRVYKTLQRMLTEGGALHN 214
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -1
Query: 288 GLLFGIFSEENSLNPAKHFKIQSPKHS 208
G+L IF+ +NSL P K KIQS + S
Sbjct: 214 GILNTIFNSQNSLTPQK--KIQSSERS 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,357
Number of Sequences: 5004
Number of extensions: 52579
Number of successful extensions: 313
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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