Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H24
(912 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 34 0.18
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.96
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 31 0.96
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 2.2
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747... 30 2.2
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 29 3.9
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 29 3.9
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 33.9 bits (74), Expect = 0.18
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +1
Query: 433 GENXVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTDK 609
GE V + +GT G+ + +G ++ PV + LGRI G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 610 TAAIHAEAPXFVDMSVQQEXLVXGIXVVHLL 702
I + + + +E + GI + ++
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVM 194
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.5 bits (68), Expect = 0.96
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 509 PESSTGCPRTKPSVPSMAMVRTXFSPKCCATSKTKRGDRFCTSRAFR 369
P ++ G PR PS P + PKC + G FCT F+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 31.5 bits (68), Expect = 0.96
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 433 GENXVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPI 597
GE V + +GT G+ + +G ++ PV + LGR+ G+PID PI
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPI 119
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 575 GSPITXMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 450
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>03_02_0325 -
7467862-7468054,7468668-7468752,7469124-7469290,
7470130-7471133
Length = 482
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 567 DYXDDASEGFSSHRDTNG*ARVEYGLPTD*AFSTVHGNGTYXVLSQVLRHLQDQAGRSI 391
D+ DD +EG + +D +G A + YGL TV G VL+Q+ + L++ S+
Sbjct: 171 DHEDDDAEGAEAEKDADGEAALSYGL-------TVASKGQEAVLAQLDKVLEEYTTFSV 222
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 476 PSVPSMAMVRTXFSPKCCATSK 411
P+ PS A VR SP+CC+ S+
Sbjct: 3 PTAPSPASVRAAASPRCCSRSR 24
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = -2
Query: 701 SRWTTXIPXTRXSCCTDMSTNXGASAWIAAVL----SVGMGPRSSIGSPITXMMRPRVSA 534
++W++ + + C D + G AW L VG GP S+ +P+ R S+
Sbjct: 25 AKWSSGMVKVKYECDDDDDGDGGGDAWRRKALLYGDEVGSGPSSAAAAPLVHRSHGRASS 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,847,629
Number of Sequences: 37544
Number of extensions: 391358
Number of successful extensions: 986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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