Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H24
(912 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 191 5e-49
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 54 2e-07
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 54 2e-07
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 36 0.053
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 35 0.093
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 31 1.1
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 31 1.5
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 4.6
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 4.6
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 191 bits (466), Expect = 5e-49
Identities = 106/214 (49%), Positives = 125/214 (58%), Gaps = 5/214 (2%)
Frame = +1
Query: 181 CRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKASXXXXXXXXXXXXXXXXXX----- 345
C + + + NN K + TG A + A K S
Sbjct: 24 CALPAASIRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQ 83
Query: 346 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENXVRTIAMDGTEGLVRGQPVLDSGSPIRI 525
F++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+I
Sbjct: 84 FDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKI 143
Query: 526 PVGAETLGRIIXVIGEPIDERGPIPTDKTAAIHAEAPXFVDMSVQQEXLVXGIXVVHLLA 705
PVG ETLGRI+ VIGEPIDERGPI + AAIHAEAP FV+MSV+QE LV GI VV LLA
Sbjct: 144 PVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLA 203
Query: 706 XMPXVXXLGCLADLVWAPLYXLXXXIXXVXQXHG 807
+G + I V + HG
Sbjct: 204 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHG 237
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +1
Query: 418 VAQHLGENXVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPI 597
+A +L + V + + + G V +G+ + +PVG LGR++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 598 PTDKTAAIHAEAPXFVDMSVQQEXLVXGIXVVHLL 702
+ + + +AP + +E +V G+ V L
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSL 157
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 53.6 bits (123), Expect = 2e-07
Identities = 26/95 (27%), Positives = 48/95 (50%)
Frame = +1
Query: 418 VAQHLGENXVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIXVIGEPIDERGPI 597
+A +L + V + + + G V +G+ + +PVG LGR++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 598 PTDKTAAIHAEAPXFVDMSVQQEXLVXGIXVVHLL 702
+ + + +AP + +E +V G+ V L
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSL 184
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 35.5 bits (78), Expect = 0.053
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 556 IXVIGEPIDERGPIPTDKTAAIHAEAPXFVDMSVQQEXLVXGIXVVHLL 702
+ V+G PID +GPI + + + +AP + +E +V G+ V L
Sbjct: 101 VVVLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSL 149
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 34.7 bits (76), Expect = 0.093
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 430 LGENXVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTD 606
+ +N +GT G+ + + +G +R PV + LGRI G+PID+ P+ +
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE 130
Query: 607 KTAAIHAEAPXFVDMSVQQEXLVXGIXVVHLL 702
I+ + +E + GI + ++
Sbjct: 131 DFLDINGQPINPWSRIYPEEMIQTGISAIDVM 162
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 469 TEGLVRGQPVLDSGSPIRIPVGAETLGRIIXVIGEPIDE 585
T G+ G PVL +G P+ + +G +G I I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 505 SGSPIRIPVGAETLGRIIXVIGEPIDERGPIPTDKTAAIHAEAPXFVDMSVQQEXLVXGI 684
+G R PV + LGRI G+PID+ P+ + I+ + + +E + GI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 685 XVVHLL 702
+ ++
Sbjct: 169 SAIDVM 174
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -2
Query: 650 MSTNXGASAWIAAVLSVGMGPRSSIGSPITXMMRPRVSAPTGIRMGEPESSTGCPRTKPS 471
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 9 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
Query: 470 VPSMAMVRTXFSP 432
P+ A +T P
Sbjct: 69 TPTAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -2
Query: 650 MSTNXGASAWIAAVLSVGMGPRSSIGSPITXMMRPRVSAPTGIRMGEPESSTGCPRTKPS 471
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
Query: 470 VPSMAMVRTXFSP 432
P+ A +T P
Sbjct: 198 TPTAAPPKTCAPP 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,125
Number of Sequences: 27780
Number of extensions: 323260
Number of successful extensions: 779
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -