Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H24
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.72 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.9  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 66  GTGRIVT*RICDFL*PVRSYFAAFLLNFQK 155
           GTG I+  +   F+ P+   F AF ++F+K
Sbjct: 217 GTGTIILKKTVCFVIPIMLLFLAFFVSFRK 246


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 91  LYVTIRPVPMGXIKILREVPHIVRXVXE 8
           LY+       G I IL + PHI   V +
Sbjct: 483 LYIFFLVTTAGTIGILMDAPHIFEYVDQ 510


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +1

Query: 151 KNIIEMFPTVCRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKA 288
           +N++     VC++        + +ATE A    G  +  R  A +A
Sbjct: 764 RNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRWTAPEA 809



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 394 RSPRLVLEVAQHLGENXVRTIAMDGTE 474
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,881
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)