Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H21
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.16
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.28
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.38
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.87
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.87
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.87
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.87
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.5
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 28 1.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 1.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.0
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 27 3.5
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 27 4.6
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 6.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.16
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Frame = +2
Query: 659 VXAFLIKXKKXXPXXPPPPPXPPPXXPPXXXXAPRTS-PFXPGHPGSXTXXXIXXPXXXP 835
V A + K P PPPP PP + +S P P P S I P
Sbjct: 299 VSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGR 358
Query: 836 PXXXPPXPXXXP 871
PP P P
Sbjct: 359 SAPPPPPPRSAP 370
Score = 30.3 bits (65), Expect = 0.38
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +2
Query: 695 PXXPPPPPXPPPXXPPXXXXAPRTSPF-XPGHPGSXTXXXIXXPXXXPPXXXPPXPXXXP 871
P P PP PP P AP + P P P I P PP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Frame = +2
Query: 695 PXXPPP-PPXPPPXXPPXXXXAPRTSPFXPGHPGSXTXXXIXXPXXXPPXXXPPXPXXXP 871
P PP PP PP P AP P P P P PP P P
Sbjct: 425 PSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/55 (27%), Positives = 16/55 (29%)
Frame = +2
Query: 695 PXXPPPPPXPPPXXPPXXXXAPRTSPFXPGHPGSXTXXXIXXPXXXPPXXXPPXP 859
P PP P P PP AP P G P + P P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.28
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = -1
Query: 869 GGGWXXXGXXGGGXXGGXGWXGRXGSXGGRXXRGRCXG 756
GG G GGG G G GR G+ GGR RG G
Sbjct: 19 GGFNGGRGGFGGGRGGARG-GGRGGARGGRGGRGGARG 55
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 783 PGXKGEVRGAXXXXGGXXGGGXGGGGGXXG 694
PG +G G+ GG GG G GGG G
Sbjct: 5 PGSRGGRGGSRGGRGGFNGGRGGFGGGRGG 34
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = -3
Query: 789 GWPGXKGEVRGAXXXXGGXXGGGXGGG-GGXXG 694
G G +G G GG GG GGG GG G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARG 45
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 695 PXXPPPPPXPPPXXPPXXXXAP 760
P PPPPP PP PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 695 PXXPPPPPXPPPXXPPXXXXAPRTSP 772
P PPPP PPP P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 713 PPXPPPXXPPXXXXAPRTSPFXPGHPG 793
PP PP PP P + P P PG
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Frame = +2
Query: 704 PPPPPXPPPXXPPXXXXAPRTSP-FXPGHPGSXTXXXIXXPXXXPPXXXPPXP 859
PPPPP PPP A + G S P P PP P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPP 241
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 704 PPPPPXPPPXXPP 742
P PPP PPP PP
Sbjct: 236 PAPPPPPPPTLPP 248
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.87
Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Frame = +2
Query: 695 PXXPPPPPXPPPXXPPXXXXAPRTSPFXP--GHPGSXTXXXIXXPXXXPPXXXPPXPXXX 868
P PP P PP P + R S F P GH + T P P P
Sbjct: 195 PPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVP 254
Query: 869 P 871
P
Sbjct: 255 P 255
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Frame = +2
Query: 695 PXXPPPPPXPPPXXPPXXXXAPRTSPFXPGH--PGSXTXXXIXXPXXXP--PXXXPPXPX 862
P PP P PP P P +P P P + + P P P PP P
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Query: 863 XXP 871
P
Sbjct: 200 KVP 202
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.87
Identities = 15/55 (27%), Positives = 17/55 (30%)
Frame = +2
Query: 695 PXXPPPPPXPPPXXPPXXXXAPRTSPFXPGHPGSXTXXXIXXPXXXPPXXXPPXP 859
P P P PP P P++S P P P P PP P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Frame = +2
Query: 707 PPPPXPPPXXPPXXXXAPRTSPF-XPGHPGSXTXXXIXXPXXXPPXXXPPXP 859
PP P P PP A P P + P PP PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Frame = +2
Query: 677 KXKKXXPXXPPPPPXPPPXXP--PXXXXAPRTSPFXPGHPGSXTXXXIXXPXXXPPXXXP 850
K P PPP P P P P AP P G P P P P
Sbjct: 1054 KSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV-PAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 851 PXP 859
P P
Sbjct: 1113 PVP 1115
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/59 (23%), Positives = 18/59 (30%)
Frame = +2
Query: 683 KKXXPXXPPPPPXPPPXXPPXXXXAPRTSPFXPGHPGSXTXXXIXXPXXXPPXXXPPXP 859
K P PP PPP +P + P P + + P PP P
Sbjct: 957 KASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVP 1015
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/50 (28%), Positives = 16/50 (32%)
Frame = +2
Query: 704 PPPPPXPPPXXPPXXXXAPRTSPFXPGHPGSXTXXXIXXPXXXPPXXXPP 853
PPPP P P P +P G P + PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 839 GGGXXGGXGWXGRXGSXGGRXXRGRCXGPG 750
GGG GG G G G GGR G G G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRG 475
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -2
Query: 334 PKEAGLELSCGELWCKVERNLRVFPFFEVAQSTVNTGVNSDLVHKYTRWRPLPDIAL 164
PKE L++ G++ ++ +L P+F+V S ++S LV K + RP P A+
Sbjct: 96 PKEKKLQVVLGDV---IKTDL---PYFDVCVSNTPYQISSPLVFKLLQQRPAPRAAI 146
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 695 PXXPPPPPXPPP 730
P PPPPP PPP
Sbjct: 942 PAFPPPPPPPPP 953
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Frame = +2
Query: 704 PPPPPX---PPPXXPPXXXXAPRTSP 772
PPPPP PPP PP P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Frame = -3
Query: 870 GXXXGXGGXXXGGXXXGXXMXXXVXEPGWPGXKGEVRGAXXXXGGXXGG---GXGGGGGX 700
G G GG G G G+ G G G GG GG G GG GG
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
Query: 699 XG 694
G
Sbjct: 265 PG 266
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -1
Query: 869 GGGWXXXGXXGGGXXGGXGWXGRXGSXGG 783
GGG+ G GG G G G G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGG 215
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 789 GWPGXKGEVRGAXXXXGGXXGGGXGGGGG 703
G PG G G G GGG GG GG
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 224 PCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 361
PC+++ L + A+ +FT +TT+ G GL+ GA I F
Sbjct: 429 PCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -2
Query: 352 FSAILQPKEAGLELSCGELWCKVERNLRVFPFFEVAQSTVNTGVNSDLVHKYTRWRP 182
FSA Q K A + + EL VE F F + V T +N+D + K+T P
Sbjct: 155 FSAYGQSK-AAINFTMKEL--SVELADEHFTFISIHPGVVKTDMNADAIKKFTETSP 208
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 704 PPPPPXPPP 730
PPPPP PPP
Sbjct: 306 PPPPPPPPP 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,729
Number of Sequences: 5004
Number of extensions: 50848
Number of successful extensions: 283
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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