Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H21
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   8.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 704  PPPPPXPP 727
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 707  PPPPXPPP 730
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 695 PXXPPPPPXPPPXXPP 742
           P  P PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 151 NVVTTRLCREVDASACTCERG 213
           NVV   LC ++ A  C C  G
Sbjct: 56  NVVPKPLCIKICAPGCVCRLG 76


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 151 NVVTTRLCREVDASACTCERG 213
           NVV   LC ++ A  C C  G
Sbjct: 56  NVVPKPLCIKICAPGCVCRLG 76


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 278 SFDFTPQFSTTKLKTGLFGLKNG 346
           +FD+ P+++   +    F LKNG
Sbjct: 228 TFDYDPRYAKMTIDGESFTLKNG 250


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 710 PPPXPPPXXPP 742
           PPP  PP  PP
Sbjct: 46  PPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,022
Number of Sequences: 438
Number of extensions: 4556
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)