Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H19
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    58   2e-09
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    52   8e-08
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    39   8e-04
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    36   0.007
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    30   0.47 
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   2.5  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +2

Query: 314 LGRSLSSXK-GQKVVVDPNRACSLCDFCRKGKYQYCLTAGINXTVGIWRDGGWAQYVKVP 490
           +G+ +SS K G  V V+P   C LCD+CR G+Y  C       T     DG    Y    
Sbjct: 76  VGKGVSSLKPGDPVAVEPGCVCRLCDYCRSGRYNLCPHMEFAATPPY--DGTLRTYYITT 133

Query: 491 QDQVYLLPDGVSTXPGGLCXPYSCVAHGYXRASPLLVXXKILIXXXGXIG 640
           +D    LP  +S   G L  P S   H   R + L    ++L+   G +G
Sbjct: 134 EDFCTKLPKQISVEEGALFEPMSVAVHAMTRGN-LKCGSRVLVMGCGTVG 182



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
 Frame = +1

Query: 175 NDXDVIVKVEYSGICGTDLHIVQ----GEFPASKERPLPLGHEFSGTITDVGK 321
           +D  V V ++ +GICG+D+H  +    G+F   K  P+ LGHE +G + +VGK
Sbjct: 28  DDHQVKVAIKATGICGSDVHYWKEGGIGDFILKK--PMILGHESAGVVVEVGK 78


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 20/45 (44%), Positives = 32/45 (71%)
 Frame = +1

Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
           +V+V ++Y+G+C TDLH +QG++P   + PL  GHE +G +  VG
Sbjct: 35  EVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVG 79


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
 Frame = +1

Query: 115 FDGKTLTLK----YXNKYPLPKXE------NDXDVIVKVEYSGICGTDLHIVQGEFPASK 264
           F+GKT+T K    +  K PL   +         +V VKV++S +C TD + + G  P   
Sbjct: 3   FEGKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEG- 61

Query: 265 ERPLPLGHEFSGTITDVGK 321
             P+ LGHE +G +  +G+
Sbjct: 62  AFPIVLGHEGAGIVESIGE 80



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +2

Query: 341 GQKVVVDPNRACSLCDFCRKGKYQYCLTAGINXTVGIWRDG 463
           G  V++     C  C FCR GK   C         G+  DG
Sbjct: 88  GDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDG 128


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +1

Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
           +V +K+  SG+C TD + + G+ P     P+ LGHE +G +  VG
Sbjct: 39  EVRIKIVNSGVCHTDAYTLSGKDPEGL-FPVILGHEGAGIVESVG 82


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 341 GQKVVVDPNRACSLCDFCRKGKYQYCLT 424
           G +VV+  + AC  C FC++ +Y  C T
Sbjct: 116 GDRVVIAFDLACGQCSFCKRHEYAACDT 143


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 231 THCTG*VSGFQRAPPTAWSRIQWHHYG 311
           T+ T   SGF+ APP AW     H YG
Sbjct: 652 TNVTRKFSGFESAPPAAWYLQFSHLYG 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,628
Number of Sequences: 5004
Number of extensions: 46412
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)