Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H19
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1024 - 10349061-10349200,10349373-10350040,10350478-103505... 50 2e-06
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064... 50 2e-06
09_04_0030 + 13940168-13940250,13940703-13941714 49 4e-06
10_08_0101 - 14789994-14790205,14790290-14790957,14791232-147913... 49 5e-06
09_04_0029 - 13932414-13933416,13933821-13933903 49 5e-06
09_04_0031 + 13946692-13946774,13947007-13948012 48 7e-06
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45... 47 2e-05
03_02_0208 + 6420576-6420658,6421640-6421753,6421848-6422379,642... 46 3e-05
02_01_0656 - 4870315-4870975,4872018-4872245,4872874-4872987,487... 46 5e-05
04_02_0018 - 8595479-8595678,8595782-8595935,8596396-8597032,859... 45 7e-05
09_04_0028 - 13928542-13929538,13929736-13929818 44 1e-04
10_01_0344 - 3777610-3777758,3777870-3777959,3778950-3779025,377... 38 0.008
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 36 0.031
01_06_0189 - 27319698-27320141 34 0.16
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495... 33 0.38
11_01_0688 - 5667539-5667655,5667792-5667953,5668084-5668179,566... 31 0.87
02_05_1209 + 34948899-34948938,34949086-34949222,34949854-349499... 31 0.87
10_02_0173 + 6191676-6191764,6192147-6192260,6192411-6192638,619... 31 1.1
02_04_0129 + 20020388-20021215 29 4.6
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 28 8.1
03_02_0715 + 10621789-10623243,10624074-10625018 28 8.1
>08_01_1024 -
10349061-10349200,10349373-10350040,10350478-10350591,
10351956-10352032
Length = 332
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +1
Query: 178 DXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK 321
D DV++K+ Y GIC +DLH ++ E+ + PL GHE +G +T+ GK
Sbjct: 30 DDDVVIKILYCGICHSDLHSIKNEW-KNATYPLVPGHEIAGVVTEAGK 76
>04_04_1128 +
31103582-31103709,31105231-31105344,31105906-31106446,
31106911-31107003,31107041-31107194,31107296-31107498
Length = 410
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1
Query: 178 DXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK 321
D DV +KV Y GIC +DLH ++ E+ + P+ GHE +G +T+VGK
Sbjct: 47 DDDVAIKVLYCGICHSDLHTIKNEW-RNAVYPVVAGHEITGVVTEVGK 93
>09_04_0030 + 13940168-13940250,13940703-13941714
Length = 364
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/51 (45%), Positives = 32/51 (62%)
Frame = +1
Query: 166 KXENDXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
+ + D DV +KV Y GIC TDLHIV+ ++ + P+ GHE G +T VG
Sbjct: 28 RAQKDDDVTIKVLYCGICHTDLHIVKNDW-GNAMYPVVPGHEIVGVVTGVG 77
>10_08_0101 -
14789994-14790205,14790290-14790957,14791232-14791345,
14794826-14794932
Length = 366
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/48 (45%), Positives = 32/48 (66%)
Frame = +1
Query: 178 DXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK 321
D DV +K+ + GIC +DLH ++ E+ S PL GHE +G +T+VGK
Sbjct: 40 DDDVAIKILFCGICHSDLHCIKNEWKHS-IYPLVPGHEIAGVVTEVGK 86
>09_04_0029 - 13932414-13933416,13933821-13933903
Length = 361
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +1
Query: 166 KXENDXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
+ + D DV +KV Y GIC TDLH+V+ ++ + P+ GHE G +T VG
Sbjct: 28 RAQKDDDVTIKVLYCGICHTDLHVVKNDW-GNAMYPVVPGHEIVGVVTGVG 77
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 371 ACSLCDFCRKGKYQYC----LTAGINXTVGIWRDGGWAQYVKVPQDQVYLLPDGV 523
+C CD C KG YC +T+ G GG++ + V + V +P G+
Sbjct: 97 SCRTCDSCGKGYENYCPTMVITSNGKDYGGAATQGGFSDAIVVNEHYVLRVPAGL 151
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 48.4 bits (110), Expect = 7e-06
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +1
Query: 166 KXENDXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
+ + + DV +KV Y GIC TDLHI++ E+ + P+ GHE G +T VG
Sbjct: 28 RVQQEDDVTIKVLYCGICHTDLHIIKNEW-GNAMYPVVPGHEIVGVVTGVG 77
Score = 32.7 bits (71), Expect = 0.38
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 371 ACSLCDFCRKGKYQYCLTAGI--NXT--VGIWRDGGWAQYVKVPQDQVYLLPDGVSTXPG 538
+C CD C KG YC T I N T G GG++ + V QD V +P S P
Sbjct: 97 SCRACDSCGKGYENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVVRVP--ASLPPD 154
Query: 539 GLCXPYSC 562
G P C
Sbjct: 155 G-AAPLLC 161
>08_01_0065 +
452383-452629,452733-452868,453049-453118,453237-453330,
453426-453639,453756-453897,454076-454246,454586-454780
Length = 422
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +1
Query: 121 GKTLTLKYXNKYPLPKXENDXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSG 300
G+ LTL+ + P PK ++++K + G+C +DLH+++GE P S P +GHE +G
Sbjct: 59 GRPLTLEDF-RMPRPKA---GELLIKTKACGVCHSDLHVLKGELPFSS--PCVVGHEITG 112
Query: 301 TITDVG 318
+ D G
Sbjct: 113 EVVDHG 118
>03_02_0208 +
6420576-6420658,6421640-6421753,6421848-6422379,
6422452-6422605,6422655-6422947
Length = 391
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 154 YPLPKXENDXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
YPL + + D DV+VK+ + GIC +DL ++ E+ +K +P GHE G + +VG
Sbjct: 25 YPL-RAKGDEDVVVKILFCGICHSDLSTIKNEWGNAKYPVVP-GHEIVGVVAEVG 77
>02_01_0656 -
4870315-4870975,4872018-4872245,4872874-4872987,
4873813-4873901
Length = 363
Score = 45.6 bits (103), Expect = 5e-05
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
DV+VKV Y GIC TD+H + ASK P+ GHE G + +VG
Sbjct: 36 DVVVKVLYCGICHTDIHQAKNHLGASK-YPMVPGHEVVGEVVEVG 79
>04_02_0018 -
8595479-8595678,8595782-8595935,8596396-8597032,
8597126-8597217
Length = 360
Score = 45.2 bits (102), Expect = 7e-05
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
DV +KV+Y G+C TDLH + ++ + +P GHE +G +T VG
Sbjct: 37 DVTIKVKYCGMCHTDLHFIHNDWGITMYPVVP-GHEITGVVTKVG 80
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +1
Query: 166 KXENDXDVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
+ + + DV +KV Y GIC TDLH ++ E+ + P+ GHE G + VG
Sbjct: 28 RVQEEDDVTIKVLYCGICHTDLHTIKNEW-GNAMYPVVPGHEIVGVVAGVG 77
Score = 33.1 bits (72), Expect = 0.28
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 371 ACSLCDFCRKGKYQYCLTAGI--NXT--VGIWRDGGWAQYVKVPQDQVYLLPDGVSTXPG 538
+C CD C KG YC T I N T G GG++ + V QD V +P S P
Sbjct: 97 SCRACDSCGKGDENYCPTMVITSNGTDYGGATTQGGFSDVMVVRQDYVLRVP--ASLPPD 154
Query: 539 GLCXPYSC 562
G P C
Sbjct: 155 G-AAPLLC 161
>10_01_0344 -
3777610-3777758,3777870-3777959,3778950-3779025,
3779206-3779288,3780456-3780799,3782064-3782113,
3782406-3782542,3782692-3782776
Length = 337
Score = 38.3 bits (85), Expect = 0.008
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK 321
+V +KV ++ IC TDL +GE ++ P LGHE +G + VG+
Sbjct: 53 EVRLKVLFTSICHTDLSAWKGENELQRKFPRILGHEAAGVVESVGE 98
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 36.3 bits (80), Expect = 0.031
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHIVQGEFPAS--KERPLPLGHEFSGTITDVG 318
DV V+++ GICG+D+H ++ A + P+ +GHE +G I +VG
Sbjct: 48 DVRVRMKAVGICGSDVHYLREMRIAHFVVKEPMVIGHECAGVIEEVG 94
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 488 PQDQVYLLPDGVSTXPGGLCXPYSCVAHGYXRASPLLVXXKILIXXXGXIG 640
P D + LP+ VS G +C P S H RA + +LI G IG
Sbjct: 173 PGDLCFKLPENVSLEEGAMCEPLSVGVHACRRAD-VGPETGVLIMGAGPIG 222
>01_06_0189 - 27319698-27320141
Length = 147
Score = 33.9 bits (74), Expect = 0.16
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 357 WIRTEPAASVISVVKENTSTA 419
W+R EPAASV+ VVK T+TA
Sbjct: 13 WLRPEPAASVVDVVKVETTTA 33
>11_06_0432 +
23448482-23448570,23448987-23449100,23449514-23449580,
23449614-23449741,23452786-23453071,23453264-23453414,
23453603-23453799
Length = 343
Score = 32.7 bits (71), Expect = 0.38
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
DV +++ + G+C D+ + F S PL GHE +G +T+VG
Sbjct: 36 DVSLRITHCGVCYADVIWTRNMFNDSIY-PLVPGHEIAGVVTEVG 79
>11_01_0688 -
5667539-5667655,5667792-5667953,5668084-5668179,
5668278-5668339,5668434-5668509,5668612-5668694,
5668807-5669132,5669741-5669787,5669900-5670036,
5670135-5670168
Length = 379
Score = 31.5 bits (68), Expect = 0.87
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHI--VQGEFPASKERPLPLGHEFSGTITDVGK 321
+V VK+ Y+ +C TD++ +G+ P P LGHE G + VG+
Sbjct: 36 EVRVKILYTALCHTDVYFWEAKGQTPVF---PRILGHEAGGIVESVGE 80
>02_05_1209 +
34948899-34948938,34949086-34949222,34949854-34949900,
34949990-34950315,34950640-34950722,34950801-34950876,
34951499-34951656,34951979-34952140,34952235-34952351
Length = 381
Score = 31.5 bits (68), Expect = 0.87
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVGK 321
+V VK+ ++ +C TD + G+ P P LGHE +G + VG+
Sbjct: 38 EVRVKILFTALCHTDHYTWSGKDPEGL-FPCILGHEAAGIVESVGE 82
>10_02_0173 +
6191676-6191764,6192147-6192260,6192411-6192638,
6192898-6193183,6193350-6193500,6193615-6193811
Length = 354
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 184 DVIVKVEYSGICGTDLHIVQGEFPASKERPLPLGHEFSGTITDVG 318
DV +++ + G+C D+ + S PL GHE +G +T+VG
Sbjct: 36 DVSLRITHCGVCYADVAWTRNILNNSMY-PLVPGHEIAGVVTEVG 79
>02_04_0129 + 20020388-20021215
Length = 275
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 372 PAASVISVVKENTSTA*PPVLTVPSGSGGTEAGP 473
P ++V K++ PPV+ P G GG AGP
Sbjct: 18 PRPPRLAVSKDSHKVRKPPVVPQPRGGGGVVAGP 51
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 380 LCDFCRKGKYQYCLTAGINXTVGIWRDGG 466
LCD C + YC+ G G W GG
Sbjct: 476 LCDICDSSAHTYCVGLGRQVPEGNWYCGG 504
>03_02_0715 + 10621789-10623243,10624074-10625018
Length = 799
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 380 LCDFCRKGKYQYCLTAGINXTVGIWRDGG 466
LCD C + YC+ G G W GG
Sbjct: 520 LCDICDSSAHTYCVGLGREVPEGNWYCGG 548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,965,522
Number of Sequences: 37544
Number of extensions: 372650
Number of successful extensions: 952
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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