Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H16
(913 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 36 0.045
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 36 0.059
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.42
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 31 1.7
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 30 2.9
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.9
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.9
01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,708... 29 6.8
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 35.9 bits (79), Expect = 0.045
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +1
Query: 103 KFFMIFVLALLA--MANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI 276
K ++F L L A +A+A+ +N +E P +PP P+ + Y+P
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPP 66
Query: 277 DNGAYYVDPPQGRPYFKPTPFPGARGG 357
+ YY DPP Y+ P P P GG
Sbjct: 67 HSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 35.5 bits (78), Expect = 0.059
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 157 PVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFK 327
P + + Y P + P V PP Y P +G P N + Y +PP GRP
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439
Query: 328 PTPFPGARG 354
P P GA G
Sbjct: 440 PPPSYGAGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.42
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 196 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 345
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +1
Query: 103 KFFMIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPYIV----NPPKDYNPNGNGYE 270
+F + V+ LLA+A P A G P + P K+ + NG
Sbjct: 5 RFAAVVVVLLLALALIPGPAAAAGRALQGEKARPSEAAPAPTVAAGGSHKESAKSSNGQN 64
Query: 271 PIDNGAYYVDPPQGRPYFKPTPFP 342
P+ ++ PP +P TP P
Sbjct: 65 PVTKETHHQTPPPAKPPKDQTPPP 88
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.9 bits (64), Expect = 2.9
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +1
Query: 145 NAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 321
+AQ P V DS GY + RP P Y P G + GA PP G P+
Sbjct: 762 HAQGPYGVPPGGDSRPGYSQPEQRPAYSQP---YPPYGAPPQQPPYGAPSQQPPYGAPH 817
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 214 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 330
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 202 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 342
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>01_01_0898 + 7078900-7079079,7080269-7080301,7080480-7080653,
7080866-7083890,7084253-7084596
Length = 1251
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 22 SLLGNSLKILSTTLIFSPVITRDHIKMKFFMIFVLALLAMA 144
SL+GN+ + L FSP + + H + F+ F+L ++ +A
Sbjct: 878 SLIGNAALCGAPRLGFSPCLQKSHSNSRHFLRFLLPVVTVA 918
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,209,383
Number of Sequences: 37544
Number of extensions: 325696
Number of successful extensions: 783
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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