Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H13
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   112   7e-26
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   111   9e-26

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  112 bits (269), Expect = 7e-26
 Identities = 52/81 (64%), Positives = 59/81 (72%)
 Frame = +2

Query: 341 GKXXFHIRMRLHPFHVIRINKMLSCAGADRLQTGXRGAFGXPQGXVXRVRXGXPIMSVRS 520
           GK  FH+R+R HPFHV+RINKMLSCAGADRLQTG R AFG P G V RV  G  +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 521 XDXWKAXVIXALRRAXFXFPG 583
            D  +A  I ALRR  + FPG
Sbjct: 141 KDSSRATAIEALRRCQYKFPG 161



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 37/71 (52%), Positives = 41/71 (57%)
 Frame = +1

Query: 169 RGVPDPKIRIFDLGKXXATVDDFPLCVHLVSDEYXXXXXXXXXXGRICCNKYLXKELRKG 348
           R VPD KIRIFDLG+  A VD+FPLC+HLVS+EY           RIC NKYL K   K 
Sbjct: 24  RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83

Query: 349 SVPYPHETSPF 381
           S        PF
Sbjct: 84  SFHLRVRAHPF 94



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 99  MGRRPAXCYRYCKNKPYPKSRF 164
           M RRPA CYRYCKNKPYPKSR+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRY 22


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  111 bits (268), Expect = 9e-26
 Identities = 52/81 (64%), Positives = 59/81 (72%)
 Frame = +2

Query: 341 GKXXFHIRMRLHPFHVIRINKMLSCAGADRLQTGXRGAFGXPQGXVXRVRXGXPIMSVRS 520
           GK  FH+R+R HPFHV+RINKMLSCAGADRLQTG R AFG P G V RV  G  +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 521 XDXWKAXVIXALRRAXFXFPG 583
            D  +A  I ALRR  + FPG
Sbjct: 141 KDSSRATAIEALRRCQYKFPG 161



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 37/71 (52%), Positives = 41/71 (57%)
 Frame = +1

Query: 169 RGVPDPKIRIFDLGKXXATVDDFPLCVHLVSDEYXXXXXXXXXXGRICCNKYLXKELRKG 348
           R VPD KIRIFDLG+  A VD+FPLC+HLVS+EY           RIC NKYL K   K 
Sbjct: 24  RAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKD 83

Query: 349 SVPYPHETSPF 381
           S        PF
Sbjct: 84  SFHLRVRAHPF 94



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = +3

Query: 99  MGRRPAXCYRYCKNKPYPKSRF 164
           M RRPA CYRYCKNKPYPKSR+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRY 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,915
Number of Sequences: 5004
Number of extensions: 33151
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)