Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H13
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624...   112   4e-25
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...   109   2e-24
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...   109   4e-24
04_04_0049 - 22356139-22357649,22357764-22357995                       31   0.90 

>11_01_0740 +
           6243517-6243526,6244822-6245323,6245415-6245496,
           6245741-6245821
          Length = 224

 Score =  112 bits (269), Expect = 4e-25
 Identities = 53/84 (63%), Positives = 60/84 (71%)
 Frame = +2

Query: 332 KNCGKXXFHIRMRLHPFHVIRINKMLSCAGADRLQTGXRGAFGXPQGXVXRVRXGXPIMS 511
           KN GK  FH+R+R+HPFHV+RINKMLSCAGADRLQTG RGAFG PQG   RV  G  ++S
Sbjct: 78  KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137

Query: 512 VRSXDXWKAXVIXALRRAXFXFPG 583
           VR  +        ALRRA F FPG
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPG 161



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 34/72 (47%), Positives = 39/72 (54%)
 Frame = +1

Query: 166 CRGVPDPKIRIFDLGKXXATVDDFPLCVHLVSDEYXXXXXXXXXXGRICCNKYLXKELRK 345
           CRGVPDPKIRI+D+G     VD+FP CVHLVS E            RI CNKY+ K   K
Sbjct: 23  CRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGK 82

Query: 346 GSVPYPHETSPF 381
            +        PF
Sbjct: 83  DAFHLRVRVHPF 94



 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 22/35 (62%), Positives = 24/35 (68%)
 Frame = +3

Query: 99  MGRRPAXCYRYCKNKPYPKSRFLSGCT*SQDPYLR 203
           MGRRPA CYR  KNKPYPKSR+  G     DP +R
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRYCRGV---PDPKIR 32


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score =  109 bits (263), Expect = 2e-24
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +2

Query: 332 KNCGKXXFHIRMRLHPFHVIRINKMLSCAGADRLQTGXRGAFGXPQGXVXRVRXGXPIMS 511
           K+ GK  FH+R+R+HPFHV+RINKMLSCAGADRLQTG RGAFG PQG   RV  G  ++S
Sbjct: 74  KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133

Query: 512 VRSXDXWKAXVIXALRRAXFXFPG 583
           VR           ALRRA F FPG
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPG 157



 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 33/72 (45%), Positives = 38/72 (52%)
 Frame = +1

Query: 166 CRGVPDPKIRIFDLGKXXATVDDFPLCVHLVSDEYXXXXXXXXXXGRICCNKYLXKELRK 345
           CRGVPDPKIRI+D+G     VD+F  CVHLVS E            RI CNKY+ K   K
Sbjct: 19  CRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGK 78

Query: 346 GSVPYPHETSPF 381
            +        PF
Sbjct: 79  DAFHLRVRVHPF 90



 Score = 35.5 bits (78), Expect = 0.055
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +3

Query: 120 CYRYCKNKPYPKSRFLSGCT*SQDPYLR 203
           CYR  KNKPYPKSR+  G     DP +R
Sbjct: 4   CYRQIKNKPYPKSRYCRGV---PDPKIR 28


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score =  109 bits (261), Expect = 4e-24
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +2

Query: 332 KNCGKXXFHIRMRLHPFHVIRINKMLSCAGADRLQTGXRGAFGXPQGXVXRVRXGXPIMS 511
           K+ GK  FH+R+  HP+HV+RINKMLSCAGADRLQTG RGAFG P G   RVR G  ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444

Query: 512 VRSXDXWKAXVIXALRRAXFXFPG 583
           VR  D   A    ALRRA F FPG
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPG 468



 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 34/60 (56%), Positives = 38/60 (63%)
 Frame = +1

Query: 166 CRGVPDPKIRIFDLGKXXATVDDFPLCVHLVSDEYXXXXXXXXXXGRICCNKYLXKELRK 345
           CRGVPDPKIRIFD+G+   + DDFPLCVHLVS E            RI CNKY+ K   K
Sbjct: 330 CRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYMAKHAGK 389



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 111 PAXCYRYCKNKPYPKSRFLSGCT*SQDPYLR 203
           P  CYR  KNKPYPKSR+  G     DP +R
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGV---PDPKIR 339


>04_04_0049 - 22356139-22357649,22357764-22357995
          Length = 580

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 183 IRYTPTRTSISDTVYFCSTGSXXLAGAPW*ALQSDN 76
           +R+  TR   SD ++FC  G   L    W  L SDN
Sbjct: 275 LRHDYTRPGASDRLFFCDDGQDALRRVGWVVLLSDN 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,402
Number of Sequences: 37544
Number of extensions: 257231
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)