Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H12
(892 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 27 2.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.6
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL110485-18|CAB60366.1| 108|Caenorhabditis elegans Hypothetical... 29 4.5
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 5.9
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 5.9
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 5.9
U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog (hedg... 24 6.9
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 7.8
AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical ... 28 7.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 7.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 7.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 7.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 7.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 7.8
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 32.7 bits (71), Expect = 0.36
Identities = 22/80 (27%), Positives = 22/80 (27%)
Frame = -3
Query: 818 GGGXXKNXXPPXPPPXXXXXXXXGXXXXXXGXXXXVXXXXXXXXGXXXXGGGGGGXXXKK 639
GGG P PPP G G G GGGGGG
Sbjct: 44 GGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGG 103
Query: 638 KKKXXXXLXSPPXGGGGGXG 579
PP GGG G
Sbjct: 104 GCGGGCAPPPPPPACGGGCG 123
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 27.1 bits (57), Expect(2) = 2.2
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +1
Query: 580 PXPPPPPXGGEXRXXFXFFF--FFXXXPPPPPP 672
P PPPPP E F PPPPPP
Sbjct: 767 PPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPP 799
Score = 21.4 bits (43), Expect(2) = 2.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 553 FXPXXKKXXPXPPPP 597
F P + P PPPP
Sbjct: 715 FRPTSRPKTPPPPPP 729
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 27.1 bits (57), Expect(2) = 2.3
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Frame = +1
Query: 580 PXPPPPPXGGEXRXXFXFFF--FFXXXPPPPPP 672
P PPPPP E F PPPPPP
Sbjct: 767 PPPPPPPPHCEPTMVHVEFTPPSTSSVPPPPPP 799
Score = 21.4 bits (43), Expect(2) = 2.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 553 FXPXXKKXXPXPPPP 597
F P + P PPPP
Sbjct: 715 FRPTSRPKTPPPPPP 729
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +1
Query: 541 PXGXFXPXXKKXXPXPPPPPXGG--EXRXXFXFFFFFXXXPPPPPPXXXXP 687
P G P P PPPPP GG F PPPPPP P
Sbjct: 747 PPGGLPPI--SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +1
Query: 541 PXGXFXPXXKKXXPXPPPPPXGG--EXRXXFXFFFFFXXXPPPPPPXXXXP 687
P G P P PPPPP GG F PPPPPP P
Sbjct: 747 PPGGLPPI--SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Frame = +1
Query: 541 PXGXFXPXXKKXXPXPPPPPXGG--EXRXXFXFFFFFXXXPPPPPPXXXXP 687
P G P P PPPPP GG F PPPPPP P
Sbjct: 330 PPGGLPPI--SGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 580 PXPPPPPXGGEXRXXFXFFFFFXXXPPPPPP 672
P PPPPP GG + PPPPPP
Sbjct: 40 PPPPPPPCGGG----------YEAPPPPPPP 60
>AL110485-18|CAB60366.1| 108|Caenorhabditis elegans Hypothetical
protein Y46G5A.23 protein.
Length = 108
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 686 GXXXXGGGGGGXXXKKKKKXXXXLXSPPXGGGGGXG 579
G GGGGGG + + L GGGGG G
Sbjct: 36 GGIVLGGGGGGDSCEDGGEQQVVLIGQVLGGGGGGG 71
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = -3
Query: 227 PGNPKFXPLPXKKGXDSPAXXPPXXGXPQPXXFKNFXKRXXVP 99
P K P K D+P P G P P KN K+ P
Sbjct: 36 PAPSKLEKKPSLKRKDAPTKPVPSPGAPSPVPIKNPVKKWKAP 78
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -3
Query: 686 GXXXXGGGGGGXXXKKKKKXXXXLXSPPXGGGGGXGXXFFXXG 558
G GGGGGG ++ P GG GG G + G
Sbjct: 180 GYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGG 222
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -3
Query: 686 GXXXXGGGGGGXXXKKKKKXXXXLXSPPXGGGGGXGXXFFXXG 558
G GGGGGG ++ P GG GG G + G
Sbjct: 218 GYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGG 260
>U64857-7|AAC25861.2| 373|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 8 protein.
Length = 373
Score = 24.2 bits (50), Expect(2) = 6.9
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 547 GXFXPXXKKXXPXPPPPP 600
G F P P PPPPP
Sbjct: 222 GFFVPVPVVIPPPPPPPP 239
Score = 22.6 bits (46), Expect(2) = 6.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +1
Query: 580 PXPPPPPXG 606
P PPPPP G
Sbjct: 232 PPPPPPPPG 240
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 686 GXXXXGGGGGGXXXKKKKKXXXXLXSPPXGGGGGXGXXF 570
G GGGGGG ++ P GG GG G +
Sbjct: 218 GYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDY 256
>AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical
protein Y59A8B.10 protein.
Length = 413
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -3
Query: 686 GXXXXGGGGGGXXXKKKKKXXXXLXSPPXGGGGGXG 579
G GGGGGG + + GGGGG G
Sbjct: 235 GPSGGGGGGGGGGQSNNNSSFSSVPAFNGGGGGGGG 270
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 686 GXXXXGGGGGGXXXKKKKKXXXXLXSPPXGGGGGXGXXF 570
G GGGGGG ++ P GG GG G +
Sbjct: 180 GYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDY 218
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 686 GXXXXGGGGGGXXXKKKKKXXXXLXSPPXGGGGGXGXXF 570
G GGGGGG ++ P GG GG G +
Sbjct: 218 GYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDY 256
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 586 PPPPPXGGEXRXXFXFFFFFXXXPPPPPPXXXXP 687
PPPPP GG PPPPPP P
Sbjct: 280 PPPPPAGGSPPPPRA-----GSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 586 PPPPPXGGEXRXXFXFFFFFXXXPPPPPPXXXXP 687
PPPPP GG PPPPPP P
Sbjct: 301 PPPPPAGGSPPPPRA-----GSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 586 PPPPPXGGEXRXXFXFFFFFXXXPPPPPPXXXXP 687
PPPPP GG PPPPPP P
Sbjct: 286 PPPPPAGGSPPPPRA-----GSPPPPPPPRGSPP 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,689,119
Number of Sequences: 27780
Number of extensions: 225149
Number of successful extensions: 3024
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1812
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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