Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H12
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   0.36 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.53 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.53 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect(2) = 0.36
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 580  PXPPPPPXGGE 612
            P PPPPP  G+
Sbjct: 1356 PPPPPPPSSGQ 1366



 Score = 21.0 bits (42), Expect(2) = 0.36
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 568  KKXXPXPPPPP 600
            ++  P PPPPP
Sbjct: 1351 RQQQPPPPPPP 1361


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 144 GXPXGXGXPGGGIXPLFXW 200
           G P G G P  G+ PL  W
Sbjct: 145 GSPGGNGGPRNGLLPLLVW 163


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 144 GXPXGXGXPGGGIXPLFXW 200
           G P G G P  G+ PL  W
Sbjct: 145 GSPGGNGGPRNGLLPLLVW 163


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/12 (75%), Positives = 9/12 (75%), Gaps = 1/12 (8%)
 Frame = +1

Query: 580 PXPPPPP-XGGE 612
           P PPPPP  GGE
Sbjct: 374 PLPPPPPIRGGE 385


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 655 PPPPPPXXXXP 687
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,944
Number of Sequences: 438
Number of extensions: 3579
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)