Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H08
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    80   4e-16
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    31   0.22 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    28   1.5  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 35/57 (61%), Positives = 44/57 (77%)
 Frame = +3

Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
           LF  RP++F IGQ  QP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I  F +TL
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTL 82



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +2

Query: 620 LWVIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
           L +IA DVDP  LV+FLP LC+ MGVPY  V
Sbjct: 150 LVLIASDVDPIELVVFLPALCKKMGVPYAIV 180



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 382 KCPLRSTXLPRXWDXTTAKGLFKILEKYXPET 477
           K P       +  D  TA  +FK+L KY PET
Sbjct: 70  KVPPAIAQFQKTLDKNTATQVFKLLNKYRPET 101


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 626 VIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
           V+A D +P  ++L LP LC    VPY  V
Sbjct: 52  VMAADTEPIEILLHLPLLCEDKNVPYVFV 80


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 614 RXLWVIAHDVDPXXLVLFLPXLCRXMGVPY 703
           + L ++A D+ P  ++  +P LC    VPY
Sbjct: 70  KGLVILAGDISPMDVISHIPVLCEDNNVPY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,015
Number of Sequences: 5004
Number of extensions: 26237
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)