Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H08
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 85 5e-17
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 84 1e-16
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 84 1e-16
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 1.2
07_03_1422 + 26462871-26463434,26463772-26463897 30 2.8
07_03_1413 - 26396426-26396890 30 2.8
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 30 2.8
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 29 3.7
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 85.4 bits (202), Expect = 5e-17
Identities = 38/57 (66%), Positives = 44/57 (77%)
Frame = +3
Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
LFEKRPK F IG P +DL RFVRWPK +RIQRQ+ VL +RLKVPP +N FT+TL
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTL 81
Score = 48.8 bits (111), Expect = 6e-06
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +2
Query: 620 LWVIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
L VIAHDVDP LV++LP LCR M +PYC V
Sbjct: 131 LVVIAHDVDPIELVVWLPALCRKMEIPYCIV 161
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +3
Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
LFEKRPK F IG P +DL RFV+WPK +RIQRQ+ +L +RLKVPP +N FT+TL
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTL 80
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = +2
Query: 620 LWVIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
L VIAHDVDP LV++LP LCR M VPYC V
Sbjct: 146 LVVIAHDVDPIELVVWLPALCRKMEVPYCIV 176
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 84.2 bits (199), Expect = 1e-16
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = +3
Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
LFEKRPK F IG P +DL RFV+WPK +RIQRQ+ +L +RLKVPP +N FT+TL
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTL 64
Score = 38.3 bits (85), Expect = 0.008
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 620 LWVIAHDVDPXXLVLFLPXLCRXMGV 697
L VIAHDVDP LV++LP LCR M +
Sbjct: 130 LVVIAHDVDPIELVVWLPALCRKMEI 155
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 341 PHPAPEGCTSASSESAPSDQP 403
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 353 ALDADILGPSYKSGQVPSWLXALTNGKVLXPLLEERIHXLLGLNLXD 213
AL + P Y G+V + +T G+ L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -2
Query: 353 ALDADILGPSYKSGQVPSWLXALTNGKVLXPLLEERIHXLLGLNLXD 213
AL + P Y G+V + +T G+ L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 605 RXXRXLWVIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
R + L VIA ++ P ++ +P LC +PY V
Sbjct: 58 RGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYV 93
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 605 RXXRXLWVIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
R + L +IA ++ P ++ +P LC +PY V
Sbjct: 58 RGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYV 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,211
Number of Sequences: 37544
Number of extensions: 209439
Number of successful extensions: 571
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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