Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H08
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    86   4e-17
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    86   4e-17
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    86   4e-17
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    86   4e-17
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    31   1.1  

>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 37/57 (64%), Positives = 45/57 (78%)
 Frame = +3

Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
           LFEKR +NF IGQ  QP +D++RFV+WPKYIR+QRQ A+L +RLKVPP IN F   L
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTAL 191


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 37/57 (64%), Positives = 45/57 (78%)
 Frame = +3

Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
           LFEKR +NF IGQ  QP +D++RFV+WPKYIR+QRQ A+L +RLKVPP IN F   L
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTAL 191


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 37/57 (64%), Positives = 45/57 (78%)
 Frame = +3

Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
           LFEKR +NF IGQ  QP +D++RFV+WPKYIR+QRQ A+L +RLKVPP IN F   L
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTAL 88



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 620 LWVIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
           L +IAHDV+P  +VL LP LCR   VPY  +
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAII 185



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = +1

Query: 421 DXTTAKGLFKILEKYXPETXXXXXXXXXXXXXXKVAXXDEPPPXRXXTIRSGTNTVXXLV 600
           D  +A+  FK+L+KY PE+              + A   E    R  T+R G NT+  LV
Sbjct: 89  DSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLV 148

Query: 601 XKXXAXLV 624
               A LV
Sbjct: 149 ETRRAQLV 156


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 85.8 bits (203), Expect = 4e-17
 Identities = 37/57 (64%), Positives = 45/57 (78%)
 Frame = +3

Query: 249 LFEKRPKNFAIGQGXQPTRDLSRFVRWPKYIRIQRQKAVLXRRLKVPPPINXFTQTL 419
           LFEKR +NF IGQ  QP +D++RFV+WPKYIR+QRQ A+L +RLKVPP IN F   L
Sbjct: 32  LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTAL 88



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/31 (54%), Positives = 21/31 (67%)
 Frame = +2

Query: 620 LWVIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
           L +IAHDV+P  +VL LP LCR   VPY  +
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAII 165



 Score = 24.6 bits (51), Expect(2) = 3.2
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 421 DXTTAKGLFKILEKYXPET 477
           D  +A+  FK+L+KY PE+
Sbjct: 89  DSQSARQAFKLLDKYRPES 107



 Score = 23.4 bits (48), Expect(2) = 3.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 553 RXXTIRSGTNTVXXLVXKXXAXLV 624
           R  T+R G NT+  LV    A LV
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLV 136


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 626 VIAHDVDPXXLVLFLPXLCRXMGVPYCXV 712
           V+A D +P  ++L LP LC    VPY  V
Sbjct: 55  VMAADAEPLEILLHLPLLCEDKNVPYVFV 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,551,434
Number of Sequences: 27780
Number of extensions: 154144
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)