Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H05
         (1288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   6.0  
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206...    29   7.9  

>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
            257038-257169,257297-258589,259133-259837,260465-260549,
            260604-260650,260810-260900,261838-262101,262195-262309,
            262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/46 (34%), Positives = 17/46 (36%)
 Frame = +2

Query: 1025 SCPXPXPXXLXPXRPPPXLHXXXPXPXXPPXXRXRALWAXPRQXRA 1162
            S P P P    P  PPP      P P  PP    R L    +  RA
Sbjct: 919  SPPPPRPPGAPPPPPPPGKPGGPPPPPPPPGSLPRNLAGGDKVHRA 964


>01_02_0111 - 11220179-11220322,11220430-11220497,11220611-11220644,
            11220735-11220766,11220900-11220959,11221276-11221729
          Length = 263

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 1037 PXPXXLXPXRPPPX-LHXXXPXPXXPPXXR 1123
            P P    P +PPP  LH   P P  PP  R
Sbjct: 48   PRPLYTNPRQPPPSRLHRSPPHPPPPPLRR 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,315,594
Number of Sequences: 37544
Number of extensions: 251646
Number of successful extensions: 1006
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4004040288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)