Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_H04
(954 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0486 - 3455030-3455770 32 0.77
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 29 5.5
02_05_0786 + 31738252-31738605,31739547-31739690 29 5.5
12_02_1174 - 26696869-26698191 28 9.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 9.5
10_03_0023 - 7151465-7152111,7152222-7152405 28 9.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 9.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 9.5
>06_01_0486 - 3455030-3455770
Length = 246
Score = 31.9 bits (69), Expect = 0.77
Identities = 14/45 (31%), Positives = 17/45 (37%)
Frame = +2
Query: 806 PGXXVPXXPPXSXPXXXAPLXPAXXXXLXXPTPXXXPXXXPPXXP 940
P P PP + P P P+ + PTP P PP P
Sbjct: 109 PPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPPSP 153
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 818 VPXXPPXSXPXXXAPLXPAXXXXLXXPTPXXXPXXXPPXXP 940
VP PP P P P + PTP P PP P
Sbjct: 93 VPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPP 133
Score = 29.5 bits (63), Expect = 4.1
Identities = 14/47 (29%), Positives = 17/47 (36%)
Frame = +2
Query: 800 SXPGXXVPXXPPXSXPXXXAPLXPAXXXXLXXPTPXXXPXXXPPXXP 940
S P P PP + P + P + PTP P PP P
Sbjct: 95 SPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPYVPPPTP 141
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 29.1 bits (62), Expect = 5.5
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 642 GGNAWXLYSPVGXXXXXXXXXXX*C--SSGGRSPMEKRQQRGLFTVPGLLLAFCSHVLSC 469
GG W L PVG + GGRSP ++ + LF +P LLL C + SC
Sbjct: 283 GGQLW-LVKPVGVWQDVRQTLEESLPGTGGGRSPHDQLVVKVLFILPVLLLT-CGYNQSC 340
>02_05_0786 + 31738252-31738605,31739547-31739690
Length = 165
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 446 IHRIRGIXQERTCEQKASKRPGTVKRPRCWRFSIGLRPPDEHHKNR 583
I R+ + +ER EQ +KR K R W+ SI +RPP +N+
Sbjct: 119 IARMLTVKREREIEQGINKRLSR-KLDRKWKQSIVVRPPPSLRENK 163
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +2
Query: 830 PPXSXPXXXAPLXPAXXXXLXXPTPXXXPXXXPPXXPXP 946
PP P P P+ + P P P PP P P
Sbjct: 155 PPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPP 193
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 310 NESAN---ARGEAVCVLGALPLPRSLTRCAR 393
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 822 PXXPPXXXPXXXPPLXPLXXXSLXXPPRXXXPXXXXPXXPXP 947
P P P PPL P S PP P P P P
Sbjct: 202 PVFPTPSPPSILPPLTPQPPPSSLIPPVLPLPLLNPPPPPPP 243
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 9.5
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +3
Query: 783 CXVXSXPXLGXVFPXXPPXXXPXXXPPLXPLXXXSLXXPPRXXXPXXXXPXXPXP 947
C V S P P P P PP PL S+ PP P P P
Sbjct: 597 CLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPPPPSLPNRLVP 651
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 9.5
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = +2
Query: 821 PXXPPXSXPXXXAPLXPAXXXXLXXPTPXXXPXXXPPXXPXP 946
P P P PL P+ P P P PP P P
Sbjct: 1146 PPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPP 1187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,910,461
Number of Sequences: 37544
Number of extensions: 413578
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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