Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_H02
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273...    30   2.1  
04_04_0981 + 29912275-29912814                                         30   2.8  
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903...    28   8.7  
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    28   8.7  

>08_02_0210 +
           14324539-14324609,14324735-14325740,14325838-14327390,
           14327473-14327601,14328345-14328510
          Length = 974

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 252 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 368
           IRH +N  K+   C    +SG  C     L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777


>04_04_0981 + 29912275-29912814
          Length = 179

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
 Frame = +3

Query: 225 SNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQ----TDFKSAA 392
           S +  +  R+   I R +  G+ S    +G G  GRG +++ + RP+ +      F+ A 
Sbjct: 59  SGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRG-IVVRDERPKSRAFGWVSFRKAT 117

Query: 393 LQRVLRPIQGQPRCSERTEGISLTVFET 476
             RV+    G      R+  +S T  ET
Sbjct: 118 SDRVVEVDDG--AALARSSSVSATAVET 143


>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
            20390690-20390835,20390915-20391071,20391312-20391370,
            20391466-20391664,20392232-20392381,20392471-20392607,
            20392717-20392863,20392975-20393076,20395655-20395712,
            20395816-20395917,20396236-20396273,20396409-20396535,
            20397092-20397259,20397356-20397487,20400222-20400331,
            20400400-20400460,20400929-20401106,20401194-20401399,
            20401552-20401671,20402523-20402621,20404177-20404386,
            20404704-20404843,20404945-20405053,20405351-20405431,
            20405523-20405693,20405825-20405974,20407029-20407202,
            20407453-20407479,20407688-20407758,20407843-20407942,
            20408305-20408361,20409457-20409513,20409656-20409736,
            20410336-20410421,20410535-20410649
          Length = 1466

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +3

Query: 207  QYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKS 386
            QY + T  A++I S  R  +   +Y G+   +    + CA RGRL   E R       ++
Sbjct: 839  QYRQQTKAAVIIQSYCRSYLAHSQYMGL--KKAAITTQCAWRGRLARRELRKLKMAAKET 896

Query: 387  AALQRVLRPIQGQ 425
             ALQ     ++ Q
Sbjct: 897  GALQAAKNKLEKQ 909


>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 236 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 325
           CY  E + L++ HQI  C ++ S  V +W C
Sbjct: 71  CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,713,112
Number of Sequences: 37544
Number of extensions: 333014
Number of successful extensions: 762
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)