Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G21
         (931 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    29   3.6  
L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    29   6.3  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    29   6.3  
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    29   6.3  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 447 PPPLXFXKXKXXGKXXPXPPPPXFXXXPP 533
           PPP    K +  G   P PPPP     PP
Sbjct: 123 PPPPPPRKSRAGGSSPPPPPPPRVPRTPP 151


>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = -1

Query: 532 GGXXXKXGGGGXGXFFPXXXXFXKXRGGGXFXXVGXKKTXGXXXXXKXXXXXVXGGGGGG 353
           GG   + GGGG G  F          GGG           G           + GGGGGG
Sbjct: 83  GGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGGGFGDILGGIGSLIGGGGGG 142


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = -1

Query: 532 GGXXXKXGGGGXGXFFPXXXXFXKXRGGGXFXXVGXKKTXGXXXXXKXXXXXVXGGGGGG 353
           GG   + GGGG G  F          GGG           G           + GGGGGG
Sbjct: 108 GGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGGGFGDILGGIGSLIGGGGGG 167


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = -1

Query: 532 GGXXXKXGGGGXGXFFPXXXXFXKXRGGGXFXXVGXKKTXGXXXXXKXXXXXVXGGGGGG 353
           GG   + GGGG G  F          GGG           G           + GGGGGG
Sbjct: 129 GGGGNQGGGGGGGFNFNDIGGLINSMGGGGGGGQRQGGGGGGFGDILGGIGSLIGGGGGG 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,726,198
Number of Sequences: 27780
Number of extensions: 123063
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2391724104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)