Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_G19
(1083 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.16
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 30 0.49
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.65
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 6.0
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.16
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 524 PXXXXPXXXSXXXSXPPP--AXPXPLXPPFPHWXXXXPSAPPXPXPSA 661
P P S PPP P P PP P PSAPP P P++
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP---AGPPSAPPPPLPAS 1738
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 780 SAXALXXAPRXTXPAXSPHPSPXXXPXXPPXPXPPXPXP 896
SA P P S P P P PP P P P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.3 bits (65), Expect = 0.49
Identities = 20/57 (35%), Positives = 21/57 (36%)
Frame = -2
Query: 971 RGWXCXXRGGXRGWXXXVGWXGXGEGXGXRXXRXGXXXGXXXGGGVRGXSRXGXXXG 801
RG RGG G+ G G G G R G G GG RG R G G
Sbjct: 8 RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG-GRGGSSGG 63
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.65
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = +1
Query: 799 PPXXXPXRLXPRTPPPXXLPXXXPXLXXRXPXPSPXPSQPTXXXXPLXPP 948
PP P + P TP P +P P P P P P P PP
Sbjct: 732 PPPPPPAVIVP-TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 23.8 bits (49), Expect(2) = 7.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 569 PPPAXPXPLXPPFPHWXXXXPSAPP 643
P PA P P+ PP P P PP
Sbjct: 744 PAPA-PIPVPPPAPIMGGPPPPPPP 767
Score = 20.6 bits (41), Expect(2) = 7.0
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +2
Query: 749 PPNXPPPPXXV 781
PP PPPP V
Sbjct: 775 PPPPPPPPPAV 785
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = +1
Query: 829 PRTPPPXXLPXXXPXLXXRXPXPSPXPSQPTXXXXPLXPPR 951
P + P P P L P P P PS T P PPR
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR 273
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 539 PXXXSXXXSXPPPAXPXPLXPPFPHWXXXXPSAPPXPXPSA 661
P + S PP + P P+ P + S PP P PS+
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSS 297
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/38 (34%), Positives = 14/38 (36%)
Frame = +3
Query: 480 ASXXPXPPXPXPXXPRXRXXPXXPRGXXPXXLXPSXPP 593
A+ PP P P R R P G L P PP
Sbjct: 305 AANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.6
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = +2
Query: 509 LTXXXPXXXXPXXXSXXXSXPPPAXPXPLX---PPFPHWXXXXPSA-PPXPXPSA 661
L+ P P + P A P P+ PP P PSA PP P PS+
Sbjct: 1017 LSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = +3
Query: 783 AXALXXAPRXTXPAXSPHPSPXXXPXXPPXPXPPXPXPLSXSXP 914
A + P + P PS P PP PP P P + P
Sbjct: 1185 AAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/50 (28%), Positives = 15/50 (30%)
Frame = +1
Query: 799 PPXXXPXRLXPRTPPPXXLPXXXPXLXXRXPXPSPXPSQPTXXXXPLXPP 948
PP P P PPP P P P P + P PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 6.0
Identities = 24/84 (28%), Positives = 26/84 (30%), Gaps = 1/84 (1%)
Frame = +2
Query: 524 PXXXXPXXXSXXXSXPPPAXPXP-LXPPFPHWXXXXPSAPPXPXPSAXXXXXXXXXXXXX 700
P P P A P P + PP P PS P P PS+
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP-PIPSSLPPPAQPAAPVKS 183
Query: 701 XXXAXPXXAXAXXXXAPPNXPPPP 772
A P A PP PPPP
Sbjct: 184 PPSA-PSLPSAVPPM-PPKVPPPP 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,770
Number of Sequences: 5004
Number of extensions: 13279
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 569764052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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