Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G19
         (1083 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 822 AXSPHPSPXXXPXXPPXPXPPXP 890
           A  P PSP   P  P    PP P
Sbjct: 20  APGPQPSPHQSPQAPQRGSPPNP 42



 Score = 23.8 bits (49), Expect = 2.7
 Identities = 19/54 (35%), Positives = 19/54 (35%)
 Frame = +3

Query: 453 QPRPAWSPXASXXPXPPXPXPXXPRXRXXPXXPRGXXPXXLXPSXPPCXPXSPI 614
           QP P  SP A     PP P    P     P  P G  P    PS     P S I
Sbjct: 24  QPSPHQSPQAPQRGSPPNPSQGPP-----PGGPPGAPPSQ-NPSQMMISPASGI 71


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 864 PPXPXPPXPXPLS 902
           PP P PP P P S
Sbjct: 338 PPKPAPPPPPPSS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,839
Number of Sequences: 438
Number of extensions: 2684
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36270801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)