Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G18
         (1068 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.069
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.64 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   1.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   5.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 33.1 bits (72), Expect = 0.069
 Identities = 21/81 (25%), Positives = 28/81 (34%)
 Frame = +2

Query: 473 ALLSPQXRXXPXRPXXXCQPPXAXXRSXXRLPSXLXARXPXXXXXAPXXPXSPPXPXXPS 652
           A  +P     P  P    +PP +       +P    A  P     AP  P S P P  P+
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPA 178

Query: 653 SPPDXXXHSSX*PLLTPXXPP 715
           +P      +   P   P  PP
Sbjct: 179 APVKSPPSAPSLPSAVPPMPP 199


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
 Frame = +2

Query: 530 PPXAXXRSXXRLPSXLXARXPXXXXXA--PXXPXSPPXPXXPSSPPDXXXHSSX*PLLTP 703
           PP    RS   LP    A           P  P S P    PS+PP     +   P L P
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451

Query: 704 XXPPAXRLXXXRXXTPXQXXXSPPXP 781
             P A  L       P     +P  P
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPP 477



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
 Frame = +2

Query: 470 PALLSPQXRXXPXRPXXXCQPPXAXXRSXXRLPSXLXARXPXXXXXAPXXPXSPPXP-XX 646
           P L +      P  P     PP A        P  L    P      P  P +PP P   
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 647 PSSPP 661
           P++PP
Sbjct: 464 PAAPP 468


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/68 (30%), Positives = 24/68 (35%)
 Frame = -2

Query: 821 GXRGXQXXWVGRSXXXXXXXXXGXGXXXGXX*AVXRGGCXG*GGVXGXSGXXGLEGXRGG 642
           G RG      G           G G   G      RGG  G GG  G  G  G  G RGG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARG--GRGGSSGGRGG 66

Query: 641 XEXGXXLV 618
            + G  ++
Sbjct: 67  AKGGAKVI 74


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +3

Query: 747  PLPXXTXPPPXRXPAYPXXLXSPXPPSPPSXS 842
            P P  + PPP   P  P    S  PP  P+ S
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,608
Number of Sequences: 5004
Number of extensions: 33144
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)