Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_G17
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44... 31 1.6
12_02_0082 - 13372997-13373863,13373928-13374386 30 2.2
03_05_0583 - 25838016-25838684 29 3.8
11_01_0452 - 3503827-3504010,3504366-3504559 29 6.6
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 29 6.6
07_01_1201 - 11419851-11419913,11420090-11420311 29 6.6
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694... 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.8
>10_01_0038 +
437738-438122,439215-439501,440111-440375,440687-440784
Length = 344
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = -1
Query: 654 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 475
R H+ F G G L G + LS R GGG P+TR G G +
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271
Query: 474 TCSFLRYPLILWITVLPPLSELIPLAAA 391
T S R + + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 635 KAPSCALLFRPLPLTGYLSAFLPS 706
+ SCALLF P+PL G LPS
Sbjct: 161 RTSSCALLFSPMPLDGPTLGLLPS 184
>03_05_0583 - 25838016-25838684
Length = 222
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 630 PGKLPRALSCSDPCRLPDTCPPFSLREAWRFLIXHAV 740
PG+L CS+PCR TC P E ++ L V
Sbjct: 161 PGELRAKAGCSNPCRGNSTCGPTKDTEFFKKLCPETV 197
>11_01_0452 - 3503827-3504010,3504366-3504559
Length = 125
Score = 28.7 bits (61), Expect = 6.6
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = -1
Query: 774 LEXTTYTEXRYXQR-EX*ESATLPEGRKADRYPVSGRGRNRRAHEGAFQGETPGIFIVLS 598
LE YTE +R E EGR A R P+ G+G R H G+ G V
Sbjct: 28 LEEQGYTEGEVEERVEQARKEAEEEGRGAGRRPLPGKG--ERGHRRGVGGDGVGCAGVGV 85
Query: 597 GFATSDLSVDFCD 559
G DL +F D
Sbjct: 86 GILVIDL--EFAD 96
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 645 RALSCSDPCRLPDTCPPFSLREAWRFLIXHA 737
R L+C C P CPP+S W+ ++ A
Sbjct: 466 RELNCKSICHSP-MCPPYSAMTEWQHMVLSA 495
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 540 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPCRLPDTCP 692
L PP Q+WR+ PTG + +FP G LP A P PD P
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPA--PDRQP 63
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 155 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 54
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 352 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 507
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_02_0036 +
10468636-10468938,10469014-10469109,10469247-10469453,
10470762-10471097,10471469-10471582,10471634-10471639
Length = 353
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 721 KRHASRREKGGQVSGKRQGSEQESARGSFPGGNAW 617
K H RR +GG + E+E+ R S GG W
Sbjct: 9 KHHHHRRRRGGGGEDGGEEEEEETGRLSLRGGGFW 43
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,128,591
Number of Sequences: 37544
Number of extensions: 447081
Number of successful extensions: 1434
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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