Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G16
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   5.9  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/71 (25%), Positives = 21/71 (29%)
 Frame = +2

Query: 629 PPXXSPXALSCXXPCRLPDTCPPFSLPEAWXLSHXXRCXYPXSXXXPSLQXXPXXPNPPF 808
           PP   P       PC  P  CPP   P          C  P     P +   P  P P +
Sbjct: 31  PPPPPPMCAPPPLPCPPPPICPPQFCPP------PPMCPPPPPPPPPPMCPPPPPPMPSY 84

Query: 809 XPXAXPYPVTI 841
            P     P  +
Sbjct: 85  SPCQSYAPAPV 95


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 668 PCRLPDTCPPFSLPE 712
           P RLPD CPP  +PE
Sbjct: 143 PARLPDFCPPARVPE 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,734
Number of Sequences: 27780
Number of extensions: 287507
Number of successful extensions: 605
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)