Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G14
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...   142   6e-35
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...   138   7e-34
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   1.1  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score =  142 bits (344), Expect = 6e-35
 Identities = 67/108 (62%), Positives = 84/108 (77%), Gaps = 3/108 (2%)
 Frame = +1

Query: 103 RAKHGRGHVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYA 282
           R KHGRGHVK V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PKLY 
Sbjct: 10  RNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYSEYTIPKLYI 69

Query: 283 KLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDXSR--PQAVQR 417
           KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 70  KLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score =  138 bits (335), Expect = 7e-34
 Identities = 64/108 (59%), Positives = 83/108 (76%), Gaps = 3/108 (2%)
 Frame = +1

Query: 103 RAKHGRGHVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYA 282
           R KHGRGH K V C NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY  + +PK+Y 
Sbjct: 10  RNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYV 69

Query: 283 KLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDXSR--PQAVQR 417
           KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 70  KLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 157 RCVPKDKAIKKFVIRNIVEAAAVRDI 234
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,376
Number of Sequences: 5004
Number of extensions: 32214
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)