Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G14
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   146   2e-35
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    31   1.4  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    31   1.4  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  146 bits (353), Expect = 2e-35
 Identities = 65/89 (73%), Positives = 72/89 (80%)
 Frame = +1

Query: 103 RAKHGRGHVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYA 282
           R K  RGHV  + CTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y  + LPKLY 
Sbjct: 10  RNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYH 69

Query: 283 KLHYCVSCAIHSKVVRNRSKKDRRIRTPP 369
           KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 70  KLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 124 HVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 300
           H+K + C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 301 SCAIHSKVV-RNRSKKDRRIRTPPKS 375
            C    K++ + R  K  ++++ P S
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +1

Query: 124 HVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 300
           H+K + C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 301 SCAIHSKVV-RNRSKKDRRIRTPPKS 375
            C    K++ + R  K  ++++ P S
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSS 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,051
Number of Sequences: 27780
Number of extensions: 191365
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)