Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G13
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0885 + 20552538-20552871,20553162-20553178                       29   6.6  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    28   8.7  

>04_03_0885 + 20552538-20552871,20553162-20553178
          Length = 116

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 289 TTAXSSCRPSVHFVGKVGPKRMCVQHAFPNVRTEGV 182
           +T  S C  +VH +GK  PK +C        R  G+
Sbjct: 52  STPSSGCCTAVHTIGKQSPKCLCAVMLSSTTRNAGI 87


>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
            35420909-35420931,35421647-35421843,35421964-35422159,
            35422382-35422481,35423288-35423374,35424053-35424282,
            35424678-35424763,35425148-35425271,35425415-35428573,
            35430014-35430019
          Length = 1566

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 143  YYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSXLAXEMHTW 265
            + H  +  P    DP  P+V     DTH +W  +A   H W
Sbjct: 1391 FNHAKATHPSSSRDPGLPFVAS---DTHLIWKLVALLKHKW 1428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,189,057
Number of Sequences: 37544
Number of extensions: 134983
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)