Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G09
         (964 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.58 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = -3

Query: 599 PXPXXXPXXXPXXX-RGXXXXPXPXPPPGGGXG 504
           P P   P   P    RG    P   PPPGG  G
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -1

Query: 484 GAPPPXXXGXXXXPXPPXPPXPAPAXGGXXXXPPPPPP 371
           GAP P          P     P P+ G     PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +2

Query: 665 PGPPPXXPXXAP-RGPXXXPAXXAXPGXXGXXPPRXXP 775
           P P P     AP RG    P+    PG     PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = -1

Query: 514 GGPGXXPXXXGAPPPXXXGXXXXPXPPXPPXPAPAXGGXXXXPPPPPP 371
           G PG  P    +P     G       P  P   P  GG    PP   P
Sbjct: 19  GAPGPQPSPHQSPQAPQRG------SPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 460 GXXXXPXPPXPPXPAPAXGG 401
           G    P  P PP P P+  G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 402  GXXXPPPPPP 373
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.307    0.147    0.494 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,218
Number of Sequences: 438
Number of extensions: 7092
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)