Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_G04
         (892 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.67 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.1  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    27   4.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   4.7  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   8.3  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 425 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 309
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 285 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 389
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 787  PALXXRPRPGXXXSXXGPPPAXPPPXXXPPAP 882
            P +   P P       GPP A PPP     AP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 279 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 377
           PK   PN N  +P  NG   + PP    Y KPT
Sbjct: 46  PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 311  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 418
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 201 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 335
           P P  A   + +   P +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,823
Number of Sequences: 5004
Number of extensions: 58431
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)