Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_G04
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 37 0.019
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.40
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 32 0.53
02_04_0382 - 22501041-22501279,22501717-22501810 32 0.53
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 31 1.6
07_01_0080 + 587674-588510 31 1.6
06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150... 30 2.1
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 30 2.1
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.8
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 30 2.8
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 3.8
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379... 29 3.8
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 3.8
10_08_0223 - 15986763-15987575 25 4.7
09_04_0324 - 16686872-16687074,16687479-16687521,16687735-166880... 29 5.0
08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434... 29 5.0
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 29 5.0
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.0
03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529... 29 5.0
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 5.0
10_03_0023 - 7151465-7152111,7152222-7152405 29 6.6
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 6.6
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 29 6.6
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 29 6.6
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 29 6.6
01_01_0082 + 625198-625719 29 6.6
07_03_1136 + 24218601-24218734,24218769-24219906 24 7.6
09_04_0506 - 18188785-18190599 28 8.7
09_03_0145 - 12749288-12751510 28 8.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 8.7
08_01_0059 - 394001-394708 28 8.7
06_01_0178 + 1386981-1387505 28 8.7
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 8.7
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 28 8.7
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 37.1 bits (82), Expect = 0.019
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 219 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPG 389
QP Y P + P V PP Y P +G P N + Y +PP GRP P P G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445
Query: 390 ARG 398
A G
Sbjct: 446 AGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.40
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 240 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 389
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 32.3 bits (70), Expect = 0.53
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAPXL 888
PRP + PPP PPP PP P L
Sbjct: 340 PRPVQPSNAPPPPPPPPPPPPPPPPPKL 367
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAP 882
P P PPP PPP PP P
Sbjct: 338 PSPRPVQPSNAPPPPPPPPPPPPPPP 363
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 32.3 bits (70), Expect = 0.53
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 216 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 383
A+ T +G P ++ + PP D P+ + Y+P + YY DPP Y+ P P
Sbjct: 28 AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86
Query: 384 PGARGG 401
P GG
Sbjct: 87 PYYGGG 92
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAP 882
P+P PPPA PP PP+P
Sbjct: 58 PKPSPTPPPASPPPAPTPPQTRPPSP 83
>07_01_0080 + 587674-588510
Length = 278
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAP 882
P P S PPP PPP PP P
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPPP 118
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAP 882
P P S PPP PPP PP P
Sbjct: 94 PPPPPPSSGSPPPPPPPPPPPPPPPP 119
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAP 882
P P S PPP PPP PP P
Sbjct: 96 PPPPSSGSPPPPPPPPPPPPPPPPPP 121
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAPXL 888
P P PPP PPP PP P L
Sbjct: 95 PPPPPSSGSPPPPPPPPPPPPPPPPPPL 122
>06_01_0194 +
1503350-1503554,1504399-1504490,1504835-1504935,
1506186-1506276,1506616-1506674,1506764-1506884,
1506959-1507027,1507321-1507373,1507688-1507796,
1507895-1508065,1508148-1508306,1508561-1508650,
1508751-1508933,1509837-1510027,1510340-1510787
Length = 713
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 890 RRXGAGGXXXGGGXAGGGPXXEXXXPGRGR 801
R G GG GGG GGG GRGR
Sbjct: 681 RGGGGGGGRGGGGGGGGGRGGRGRGRGRGR 710
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 787 PALXXRPRPGXXXSXXGPPPAXPPPXXXPP 876
P+ P P S PPP PPP PP
Sbjct: 26 PSSSSAPAPASPRSPVPPPPGVPPPPPPPP 55
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 258 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 374
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +3
Query: 201 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDPPQGRPYF 368
P P+ QP G Y P Y P ++ P Y P G Y PQG+PY
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286
Query: 369 KPTPF 383
P P+
Sbjct: 287 PPQPY 291
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Frame = +3
Query: 174 NADSVVINDPDPFFAQ------PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY 335
NA++ P P A P++ NG P+ + PP P+ NGA
Sbjct: 616 NANANAAPGPPPMMANAAPVPPPSMANGAGPVPPPIAVAPPPAPPIAGAAPPPPMANGAA 675
Query: 336 YVDPPQGRPYFKPTPFPG 389
PP G P P PG
Sbjct: 676 AAAPPGGNPAPPAGPQPG 693
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +3
Query: 246 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 386
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>05_04_0206 +
19034259-19035462,19036870-19037045,19037752-19037975,
19038133-19038914,19039337-19039494
Length = 847
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +1
Query: 787 PALXXRPRPGXXXSXXGPPPAXPPPXXXPP 876
P L P PG + PPP PPP P
Sbjct: 202 PPLVSSPAPGTPVTPQPPPPPPPPPPDSKP 231
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 811 PGXXXSXXGPPPAXPPPXXXPPAP 882
PG + G PP PPP PP P
Sbjct: 254 PGTLPNGSGGPPRPPPPQVPPPPP 277
>10_08_0223 - 15986763-15987575
Length = 270
Score = 25.4 bits (53), Expect(2) = 4.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -3
Query: 878 AGGXXXGGGXAGGGP 834
AGG GGG GGGP
Sbjct: 191 AGGGGGGGGGHGGGP 205
Score = 22.2 bits (45), Expect(2) = 4.7
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = -3
Query: 860 GGGXAGGGPXXEXXXPGRGRXXSAG 786
GGG GGG E G G +G
Sbjct: 239 GGGKGGGGGGGENGGYGSGSGKGSG 263
>09_04_0324 -
16686872-16687074,16687479-16687521,16687735-16688068,
16688190-16688854
Length = 414
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 838 PPPAXPPPXXXPPAP 882
PPP PPP PPAP
Sbjct: 3 PPPPSPPPPSPPPAP 17
>08_01_0500 +
4338111-4338195,4339910-4340042,4340116-4340187,
4340524-4340587,4341383-4341459,4341586-4341657,
4341741-4341853,4341995-4342126,4342204-4342545,
4342628-4343022,4343293-4343603,4343967-4344066
Length = 631
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 811 PGXXXSXXGPPPAXPPPXXXPPAP 882
PG G PP PPP PP P
Sbjct: 178 PGTTKPCPGAPPFSPPPPYNPPTP 201
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 811 PGXXXSXXGPPPAXPPPXXXPPAP 882
PG G PP PPP PP P
Sbjct: 209 PGTTKPCPGAPPFSPPPPFNPPTP 232
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 838 PPPAXPPPXXXPPAP 882
PPPA PPP PP P
Sbjct: 277 PPPAGPPPPAPPPLP 291
>03_06_0758 -
36052261-36052301,36052463-36052697,36052895-36052966,
36056477-36056567,36056650-36056872,36056964-36057300,
36057406-36057588
Length = 393
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 766 GRCGXXFPALXXRPRPGXXXSXXGPPPAXPPPXXXPPAPXL 888
G G F AL P PPP PPP P P L
Sbjct: 118 GGGGGGFDALYRAPIGPYVRGATAPPPPPPPPMAVAPPPFL 158
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAPXLR 891
P P PPP PPP PP P ++
Sbjct: 353 PPPPPPPPPPPPPPPPPPPRPPPPPPPIK 381
>10_03_0023 - 7151465-7152111,7152222-7152405
Length = 276
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 838 PPPAXPPPXXXPPAPXL 888
PPP PPP PP P L
Sbjct: 238 PPPPPPPPSLLPPVPLL 254
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +1
Query: 802 RPRPGXXXSXXGPPPAXPPPXXXPPAP 882
RP P PPPA PPP PP P
Sbjct: 130 RPHPDIRILAHAPPPAPPPP---PPQP 153
>03_02_0514 +
9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Frame = -3
Query: 881 GAGGXXXGGGXAGGGPXXEXXXPG---RGRXXSAGKXXPH-LPLN 759
GAGG GGG GGG G S+G PH LP N
Sbjct: 107 GAGGGGGGGGGGGGGGFWSRIFSGGAAHADEKSSGDWDPHGLPAN 151
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 838 PPPAXPPPXXXPPAPXLR 891
PPP+ PPP PP P ++
Sbjct: 287 PPPSSPPPPMSPPPPAVK 304
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +1
Query: 790 ALXXRPRPGXXXSXXGPPPAXPPPXXXPPAP 882
AL +P P PPP PPP PP P
Sbjct: 61 ALSQQP-PAGIAVHPSPPPPPPPPPPPPPVP 90
>01_01_0082 + 625198-625719
Length = 173
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 222 PTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARG 398
P G GY P + NP YNP +G+ N Y+ PP G Y + F P A
Sbjct: 97 PYGGGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAA 151
Query: 399 G 401
G
Sbjct: 152 G 152
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 24.2 bits (50), Expect(2) = 7.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 890 RRXGAGGXXXGGGXAGGG 837
R GA G GGG GGG
Sbjct: 290 REDGAEGGGGGGGGGGGG 307
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 860 GGGXAGGGPXXEXXXPGRGRXXSAGKXXPHLP 765
GGG GGG RG AG P P
Sbjct: 318 GGGGGGGGGEIAGTVDLRGGGGGAGGVFPPTP 349
>09_04_0506 - 18188785-18190599
Length = 604
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -3
Query: 887 RXGAGGXXXGGGXAGGGPXXEXXXPGRGRXXSAG 786
R G GG GGG GGG G G AG
Sbjct: 313 RGGGGGGPGGGGGGGGGGNWGRGGGGMGGRGQAG 346
>09_03_0145 - 12749288-12751510
Length = 740
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 838 PPPAXPPPXXXPPAPXL 888
PPP PPP PP P L
Sbjct: 30 PPPPPPPPGIQPPPPAL 46
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAP 882
P P S PPP PPP P AP
Sbjct: 96 PPPYGVNSSQPPPPPPPPPSPPPSAP 121
>08_01_0059 - 394001-394708
Length = 235
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +1
Query: 787 PALXXRPRPGXXXSXXGPPP-----AXPPPXXXPPAP 882
P+ RP P PPP A PPP PPAP
Sbjct: 28 PSPPIRPPPPPTPRPYAPPPPSHPLAPPPPHISPPAP 64
>06_01_0178 + 1386981-1387505
Length = 174
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -3
Query: 881 GAGGXXXGGGXAGGGPXXEXXXPGRGRXXSAG 786
G GG GGG GGG + G G AG
Sbjct: 39 GGGGGGGGGGGGGGGAGGKGGKGGAGGHGGAG 70
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 805 PRPGXXXSXXGPPPAXPPPXXXPPAP 882
PRP PP+ PPP PP P
Sbjct: 74 PRPPSFAPENALPPSSPPPPSPPPPP 99
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 838 PPPAXPPPXXXPPAPXL 888
PPP PPP PP P L
Sbjct: 41 PPPPPPPPPPPPPPPPL 57
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,917,195
Number of Sequences: 37544
Number of extensions: 502200
Number of successful extensions: 5943
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4808
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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