Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F23
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    30   0.39 
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   3.6  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   8.3  

>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
 Frame = +1

Query: 361 LALYVFATFWGLYLIDEDLILPAXIQEVLPNWINHGXHTTIVPFXXLELLLTXRNYPTRX 540
           L   V   +W +   D  L++P      LP   +   H     +  ++ L     +    
Sbjct: 29  LETIVSILYWSIVSYDRSLLIPKDRPVPLPLNFDISVHLMPTVYTLIDYLFFSPPFSLSI 88

Query: 541 -VGLSVTLLIXFTXVFWIXYLYFXQGXWVYPFLDLMXWSTRILFCCTXXIIGVLFYIL 711
              L V L I  + + W+   Y     + YP L ++    + +F     II    YI+
Sbjct: 89  GPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILDPIKKTIFYTVASIISFSCYIV 146


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 401 KYRPQXVANTYKARXNAELKTXXXTLLMRGGFFGAVALVPMMSFNTAVPK 252
           +Y+P+   +T  A   A L        +R G    VAL+   S +T VPK
Sbjct: 127 EYKPKFEVDTLNATSLASLPLDIDAPCIRAGLEPEVALINHSSGSTGVPK 176


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 433 IQEVLPNWINHGXHTTIVP 489
           I +++P W   G +TTI+P
Sbjct: 268 IMQMIPGWSTTGTYTTIIP 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,759
Number of Sequences: 5004
Number of extensions: 35901
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)