Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F23
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492...    29   5.0  
02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159...    29   6.6  
11_03_0190 - 11350497-11350832,11351926-11352303,11353897-113541...    28   8.7  

>07_03_1552 -
           27648193-27648307,27648384-27648431,27649140-27649234,
           27649311-27649376,27649721-27649810,27650210-27650437,
           27650572-27650605,27651106-27651611
          Length = 393

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 1/114 (0%)
 Frame = +1

Query: 304 KNPPLIRRVXXXVFSSAFXLALYVFATFWGLYLIDEDLILPAXIQEVLP-NWINHGXHTT 480
           K   L  R    ++ ++    +    TFWGL       ++P   ++    + I  G H+ 
Sbjct: 242 KRAGLWGRCMQIIYQTSAGATMLTDITFWGL-------LVPFFYRDKFGLSLITDGMHSL 294

Query: 481 IVPFXXLELLLTXRNYPTRXVGLSVTLLIXFTXVFWIXYLYFXQGXWVYPFLDL 642
                 ++  L    +P   +   V     +    W+ +       W YPFLDL
Sbjct: 295 NAVLLLIDTFLNNMPFPWYRLAFFVFWSCSYVTFQWVLHACGAISWWPYPFLDL 348


>02_01_0241 +
           1595188-1595498,1596621-1596654,1596791-1596979,
           1597956-1598045,1598136-1598201,1598680-1598892
          Length = 300

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 214 FLTFWCFALQTIYFGTAVLNDIIGTNATAPKN 309
           + T W F L TIYFG      I G +  A +N
Sbjct: 101 YYTQWTFILVTIYFGLGTALSIYGCSKLADEN 132


>11_03_0190 -
           11350497-11350832,11351926-11352303,11353897-11354181,
           11354515-11355327
          Length = 603

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 256 GTAVLNDIIGTNATAPKNPPLIRRVXXXVFSSAFXLALYVFATFW-GLY 399
           GTA L D++   +  P   P +RR+   + +S    A    AT W G+Y
Sbjct: 47  GTASLPDLVAALSLPPAKLPFLRRLMRLLVNSGVFAAADDTATGWAGMY 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,608,270
Number of Sequences: 37544
Number of extensions: 230899
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)