Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F23
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical pr...    77   2e-14
Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical pr...    74   2e-13
AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical ...    47   2e-05
AC199167-1|ABO33247.1|  233|Caenorhabditis elegans Hypothetical ...    29   3.4  

>Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical
           protein C37E2.3 protein.
          Length = 295

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
 Frame = +1

Query: 265 VLNDIIGTNATAPKNPPLIRRVXXXV-FSSAFXLALYVFATFWGLYLIDEDLILPAXIQE 441
           VLN +  T          I+ V   + F++ F +A+ +   FWG Y+ D DL++PA + E
Sbjct: 127 VLNVVYSTLVVIGYKSKTIKEVVDFMHFTAMFPVAVILCGMFWGFYVYDSDLVMPAWVAE 186

Query: 442 VLPNWINHGXHTTIVPFXXLELLLTXRNYPTRXVGLSVTLL-IXFTXVFWIXYLYFXQGX 618
           ++P+W+NH  HT ++ F  L+     R+ P+      ++++ + F  +  +   Y+ +  
Sbjct: 187 IVPSWLNHINHTYLIVFILLDSYYHKRDAPSNSTSWMISVVYVTFYFIIVLGVKYYNR-M 245

Query: 619 WVYPFLDLMXWSTRILFCCTXXIIGVLFYIL 711
           WVYP L         LF  +  +  V+F+IL
Sbjct: 246 WVYPVLQSFSID---LFVISYILSVVIFFIL 273


>Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical
           protein C37E2.2a protein.
          Length = 225

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
 Frame = +1

Query: 343 FSSAFXLALYVFATFWGLYLIDEDLILPAXIQEVLPNWINHGXHTTIVPFXXLELLLTXR 522
           F+S F + +     FWGLY I+  L++P  I +++P+W+NH  HT  + F  L+     R
Sbjct: 75  FTSIFPVGMITCGLFWGLYAINPALVMPDWIAKLIPSWLNHITHTYPIIFIILDSYFHKR 134

Query: 523 NYPTRXVGLSVTLLIXFTXVFWIXYLYFXQGXWVYPFLDLMXWSTRILFCCTXXIIGVL- 699
             P     L  +  + F     I Y+ F  G W+YP L L  +   ++      IIG L 
Sbjct: 135 TPPKTIASLIFSAALVFVYFMIICYVRFFDGYWLYPILSLFAFEHFVI----SYIIGFLG 190

Query: 700 FYIL 711
           F++L
Sbjct: 191 FFML 194


>AC199167-2|ABO33246.1|  222|Caenorhabditis elegans Hypothetical
           protein cTel55X.1a protein.
          Length = 222

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
 Frame = +1

Query: 361 LALYVFATFWGLYLIDE-DLILPAXIQEVLPN-WINHGXHTTIVPFXXLELLLTXRNYPT 534
           + + V   FWGL+L D   L       ++L   W NHG HT  +P     L L   N+ +
Sbjct: 84  IGVAVTVLFWGLFLFDPATLARDEMAMKILTLFWFNHGLHT--LPAITAHLDLAIYNHTS 141

Query: 535 RXVGLSVTLLIXFTXVFWIX--YLYFXQGXWVYPFLDLMXWSTRILFCCTXXIIGVLFYI 708
                 +  +  F  ++ I   Y+++  G W YP L  +    R++F      I  L Y+
Sbjct: 142 FSTSAILKGIAVFVTLYLIDLHYVFYTSGFWAYPILGELAAPFRLVFIAACMFIVYLGYV 201


>AC199167-1|ABO33247.1|  233|Caenorhabditis elegans Hypothetical
           protein cTel55X.1b protein.
          Length = 233

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +1

Query: 361 LALYVFATFWGLYLIDE-DLILPAXIQEVLPN-WINHGXHTTIVPFXXLELLLTXRNYPT 534
           + + V   FWGL+L D   L       ++L   W NHG HT  +P     L L   N+ +
Sbjct: 84  IGVAVTVLFWGLFLFDPATLARDEMAMKILTLFWFNHGLHT--LPAITAHLDLAIYNHTS 141

Query: 535 RXVGLSVTLLIXFTXVFWIXY 597
                 +  +  F  ++ I +
Sbjct: 142 FSTSAILKGIAVFVTLYLIDF 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,755,799
Number of Sequences: 27780
Number of extensions: 208261
Number of successful extensions: 439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)