Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_F21
(1303 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 34 0.25
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.3
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 31 1.3
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 1.8
AF098992-8|AAC67454.2| 239|Caenorhabditis elegans Hypothetical ... 30 4.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 5.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 5.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 5.4
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 7.2
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 7.2
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 25 9.8
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 33.9 bits (74), Expect = 0.25
Identities = 37/153 (24%), Positives = 48/153 (31%)
Frame = -2
Query: 1017 WXEVVXGGARGAXXGAXEXXXRGGGXRXGXCAGREXXEDXXXSXXSXGAXXGKXXXEXGG 838
W G + G + GGG R G +G + S G G+ GG
Sbjct: 135 WGGQQGGNSNAGGWGGSQGGQNGGGGRGG--SGGQGGWGGSQDGGSQGGWGGQNGGGQGG 192
Query: 837 XRXXEXXXHSDXRGXXAKTXGCXGGLEREGAXLXRXPGXKXXXXQERGGTGXX*XIXRXS 658
+ +G G GG + G+ G Q+ GG G +
Sbjct: 193 NQGG-GGGRGGNQGGEQGGWGGQGG-SQGGSQGGSQGGWGNQGGQQGGGRGGQ----QGP 246
Query: 657 GXXGDXQXAGXGGGXXGXXXGERWGCGXKXTSG 559
G G G GGG G G RWG G G
Sbjct: 247 GGWGG---GGRGGGWGGWGRGSRWGWGRPSWGG 276
Score = 33.5 bits (73), Expect = 0.33
Identities = 44/178 (24%), Positives = 56/178 (31%), Gaps = 4/178 (2%)
Frame = -2
Query: 999 GGARGAXXGAXEXXXRG-GGXRXGXCAGREXXEDXXXSXXSXGAXXGKXXXEXG---GXR 832
GG+ GA G G GG G AG S G G + G G
Sbjct: 76 GGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGGSSGGWGGSSRSDSGSGQGGW 135
Query: 831 XXEXXXHSDXRGXXAKTXGCXGGLEREGAXLXRXPGXKXXXXQERGGTGXX*XIXRXSGX 652
+ +S+ G G GG R G+ G + G G + G
Sbjct: 136 GGQQGGNSNAGGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGG------QNGGG 189
Query: 651 XGDXQXAGXGGGXXGXXXGERWGCGXKXTSGGSXXEXXLXGXGXXQDELXXGXXTXRG 478
G Q G GGG G GE+ G G + S G G G + G +G
Sbjct: 190 QGGNQ--GGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQG 245
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.5 bits (68), Expect = 1.3
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 1240 PXPATPAXXPPPPXPWXPPP 1299
P P P PPPP P PPP
Sbjct: 58 PPPMCPPPPPPPPPPMCPPP 77
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 524 PXPXSXLSXXDPPEVXXSPQPXRSPXLXPXXPPPXPA 634
P P PP + P P P + P PPP P+
Sbjct: 47 PPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPS 83
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical protein
B0280.13 protein.
Length = 616
Score = 31.5 bits (68), Expect = 1.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 1240 PXPATPAXXPPPPXPWXPPP 1299
P ATP+ PPPP P PPP
Sbjct: 503 PPIATPSSVPPPPPPPPPPP 522
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 1.8
Identities = 19/78 (24%), Positives = 22/78 (28%)
Frame = +1
Query: 1066 PPXSPXPQXRPPXSXRXSXPFXXPAXPXXAXXXXAXXXXRLGPXXXXXXXXXXXXXXXPX 1245
PP +P PQ P + A P A + P
Sbjct: 67 PPPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPA 126
Query: 1246 PATPAXXPPPPXPWXPPP 1299
P PPPP P PPP
Sbjct: 127 PYQQQPPPPPPPPHYPPP 144
Score = 29.1 bits (62), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 1240 PXPATPAXXPPPPXPWXPPP 1299
P P P PPPP + PPP
Sbjct: 133 PPPPPPPHYPPPPPHYPPPP 152
>AF098992-8|AAC67454.2| 239|Caenorhabditis elegans Hypothetical
protein F53C3.3 protein.
Length = 239
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 1298 GGGXXGXGGGGXXAGVAGXG 1239
GGG G GGGG GV G G
Sbjct: 23 GGGGRGGGGGGARGGVGGRG 42
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 5.4
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +2
Query: 530 PXSXLSXXDPPEVXXSPQPXR--SPXLXPXXPPPXPAXCXSPXXPLXLXXXQXXPVPPR 700
P + PP SP P R SP P PP P SP P P PPR
Sbjct: 248 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP--RAGSPPPPPPPR 304
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 1079 PPPXPAXRXPDAPRXXSRXPPXXLXPXP 1162
PPP PA P PR S PP P P
Sbjct: 255 PPPPPAAGSPPPPRTGSPPPPPTGSPPP 282
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/78 (25%), Positives = 22/78 (28%)
Frame = +1
Query: 1066 PPXSPXPQXRPPXSXRXSXPFXXPAXPXXAXXXXAXXXXRLGPXXXXXXXXXXXXXXXPX 1245
PP P P+ PP + S P P A P P
Sbjct: 237 PPPPPPPKGSPPLAGSGSPP------PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 290
Query: 1246 PATPAXXPPPPXPWXPPP 1299
P PPPP P PP
Sbjct: 291 PPRAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 5.4
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +2
Query: 530 PXSXLSXXDPPEVXXSPQPXR--SPXLXPXXPPPXPAXCXSPXXPLXLXXXQXXPVPPR 700
P + PP SP P R SP P PP P SP P P PPR
Sbjct: 269 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP--RAGSPPPPPPPR 325
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 1079 PPPXPAXRXPDAPRXXSRXPPXXLXPXP 1162
PPP PA P PR S PP P P
Sbjct: 276 PPPPPAAGSPPPPRTGSPPPPPTGSPPP 303
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/78 (25%), Positives = 22/78 (28%)
Frame = +1
Query: 1066 PPXSPXPQXRPPXSXRXSXPFXXPAXPXXAXXXXAXXXXRLGPXXXXXXXXXXXXXXXPX 1245
PP P P+ PP + S P P A P P
Sbjct: 258 PPPPPPPKGSPPLAGSGSPP------PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 311
Query: 1246 PATPAXXPPPPXPWXPPP 1299
P PPPP P PP
Sbjct: 312 PPRAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 5.4
Identities = 20/59 (33%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +2
Query: 530 PXSXLSXXDPPEVXXSPQPXR--SPXLXPXXPPPXPAXCXSPXXPLXLXXXQXXPVPPR 700
P + PP SP P R SP P PP P SP P P PPR
Sbjct: 254 PLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP--RAGSPPPPPPPR 310
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 1079 PPPXPAXRXPDAPRXXSRXPPXXLXPXP 1162
PPP PA P PR S PP P P
Sbjct: 261 PPPPPAAGSPPPPRTGSPPPPPTGSPPP 288
Score = 28.7 bits (61), Expect = 9.5
Identities = 20/78 (25%), Positives = 22/78 (28%)
Frame = +1
Query: 1066 PPXSPXPQXRPPXSXRXSXPFXXPAXPXXAXXXXAXXXXRLGPXXXXXXXXXXXXXXXPX 1245
PP P P+ PP + S P P A P P
Sbjct: 243 PPPPPPPKGSPPLAGSGSPP------PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 296
Query: 1246 PATPAXXPPPPXPWXPPP 1299
P PPPP P PP
Sbjct: 297 PPRAGSPPPPPPPRGSPP 314
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical protein
Y48E1B.1 protein.
Length = 497
Score = 29.1 bits (62), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 1240 PXPATPAXXPPPPXPWXPPP 1299
P + PA PPPP P PPP
Sbjct: 350 PIISPPAPPPPPPPPPPPPP 369
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.1 bits (62), Expect = 7.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 1246 PATPAXXPPPPXPWXPPP 1299
P TPA PPPP P PPP
Sbjct: 135 PPTPAAPPPPPPP--PPP 150
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical protein
C31C9.6 protein.
Length = 965
Score = 25.4 bits (53), Expect(2) = 9.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 1240 PXPATPAXXPPPPXPWXPP 1296
P ATP+ PPPP P PP
Sbjct: 496 PPIATPSSVPPPPPP--PP 512
Score = 21.4 bits (43), Expect(2) = 9.8
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = +1
Query: 1066 PPXSPXPQXRPPXSXRXSXPFXXPA 1140
PP +P P PP P PA
Sbjct: 459 PPTTPKPAPPPPSRIPNPSPSPQPA 483
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,416,063
Number of Sequences: 27780
Number of extensions: 174716
Number of successful extensions: 2205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3631930622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -