Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_F19
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.22
05_01_0499 - 4166891-4166942,4167191-4167510 33 0.39
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 31 0.90
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 31 1.6
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933... 30 2.7
08_02_1438 + 27108359-27108889 29 3.6
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 29 3.6
05_07_0359 - 29539294-29540832,29542366-29542518 29 3.6
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.3
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.4
07_03_0723 + 20954827-20954905,20954974-20956277 28 8.4
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 28 8.4
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888 28 8.4
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -3
Query: 391 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 275
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>05_01_0499 - 4166891-4166942,4167191-4167510
Length = 123
Score = 32.7 bits (71), Expect = 0.39
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -3
Query: 469 PLALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAA 320
PLALR LL N + PS SP+ + R P P + + ASP+ +A
Sbjct: 9 PLALRGASLLGNAVAAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSA 58
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 31.5 bits (68), Expect = 0.90
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 311 VAVVEVGGP--DGAEHVLVVAGERDLQGGPGGSVRV 210
VA V GGP DGA+ V+ V L G P GS RV
Sbjct: 91 VAYVTTGGPIPDGADAVVQVEDTEQLAGAPDGSKRV 126
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 291 ADFNDRHKLSAASAGLALDNVNGHGLSLTGTRIPGFGEQLGVAGKVNL 434
A N+R + S AS +A + + HG+ + G P +G AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220
>09_04_0193 -
15492102-15492746,15492833-15492946,15493042-15493332,
15493412-15493720,15493815-15494552
Length = 698
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/58 (34%), Positives = 23/58 (39%)
Frame = -2
Query: 392 WNAGPGQAQPVPVYVVQSEPCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGS 219
W G G + PV V P +VVEV GPD + A D GG G S
Sbjct: 14 WGKGRGGRKGTPVVVTMESPN------YSVVEVDGPDAEAELRTAAVAMDKGGGRGRS 65
>08_02_1438 + 27108359-27108889
Length = 176
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 329 GGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRV 210
GG E V VE DGA +L V E+++ GG VRV
Sbjct: 79 GGVREAVRCVEYVDDDGAVLLLTVTTEKEVAVVDGGEVRV 118
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 399 GEQLGVAGKVNLFHNNNHDLSAKGVRDQELAQRHPQRA 512
GE V + L + DL A + QEL++ HPQ+A
Sbjct: 108 GESAPVGAPIALLAESEDDLQAALAKAQELSKAHPQQA 145
>05_07_0359 - 29539294-29540832,29542366-29542518
Length = 563
Score = 29.5 bits (63), Expect = 3.6
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -3
Query: 412 PSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRA 233
P KPG P R +P P S +S A AA +L +K + P+R +
Sbjct: 155 PVLEAKPGRGRP-RKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAATPLRLGVKR 213
Query: 232 APEVPSEFTVKLPAXLRARVG 170
P P + P L A+ G
Sbjct: 214 GPGRPRKNAAATPLRLGAKRG 234
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 376 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 245
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 379 PVRLSPCPFTLSRASPAEAA 320
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 406 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 305
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 433 KLTLPATPSCSPKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKS 293
K + P+ + P P ++P P + +PA A+ WR+ K+
Sbjct: 59 KTSSPSVAAPEKAPVAAAPAPVAPAPAATKQVAPARWAVDSWRTKKA 105
>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
Length = 215
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -2
Query: 566 PPSV*TCSPVRRPSVLKLG--ALGMALGEFLIANAL 465
PP PV++PS KLG A G +GE ++ +A+
Sbjct: 167 PPVACKIRPVKQPSATKLGSVAAGGCVGEVIVVDAI 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,608
Number of Sequences: 37544
Number of extensions: 393854
Number of successful extensions: 1513
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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