Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP12_F_F17
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0799 - 6273520-6274008,6274137-6274151 34 0.18
05_06_0074 + 25375431-25375631,25375785-25376195,25376474-253765... 33 0.40
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 31 0.94
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 31 1.2
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 31 1.6
01_05_0560 - 23288078-23288370,23288448-23288733 30 2.9
12_02_1193 + 26891619-26892456,26892545-26893884 29 5.0
05_04_0030 - 17338646-17338669,17338817-17339386 29 5.0
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 29 6.6
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 28 8.7
>07_01_0799 - 6273520-6274008,6274137-6274151
Length = 167
Score = 33.9 bits (74), Expect = 0.18
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 223 PACRTVRVIGRCVGGGTEGRLDEPLARSLSKE 128
P CRT+ V G+C+GGG G +DE + R ++
Sbjct: 67 PRCRTM-VKGQCIGGGAAGNVDEQVWRDCCRQ 97
>05_06_0074 +
25375431-25375631,25375785-25376195,25376474-25376589,
25377016-25377064,25377722-25378247,25378339-25379060
Length = 674
Score = 32.7 bits (71), Expect = 0.40
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = -3
Query: 615 IPRNQKVLIILPQFFLILRRMSSVTVSHINIYWLG--VKXEEALEQ---AVSLEGTKTAG 451
IP+ +K++ IL FL S+T S +N+Y++ + ++ L+ ++L G+ G
Sbjct: 231 IPQ-KKLIAILYVSFLRSTSPQSLTCSMVNLYYIDHELNIDDFLQDDDYKINLPGSNPDG 289
Query: 450 PLCYGGSRSAGQVQYQLYDVNVQWTPRYFLD 358
P G GQ+++Q Y++ + P F+D
Sbjct: 290 PNTMQG---IGQLEHQQYNLPLDLPPNSFVD 317
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 261 PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 401
P P T H I S +DD+ R VR +P+N ++ + S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = +1
Query: 295 FLRKSTTCSSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLE 474
F + ST CS ++ + ++K + RP+ + + T+ + +T+ G+C +
Sbjct: 409 FHQSSTLCS-VEFALEYCYFLVEKKSTRPIYLDDFSKLSYCTTLAEMAITEIRGGYCYQK 467
Query: 475 GNCLFQRFLRFNPKPIYIDMGNRYRRHASEDQEELRQY 588
+ F R P P D+ + R+ ++D+ + RQ+
Sbjct: 468 CHPRF-RHRDMLPPPDSADLSSSRSRYTNDDEHDARQH 504
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 158 IQPTFSATANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYRRP 286
+QP+ TAN P N S TS P ++A ++ CSS A P
Sbjct: 153 VQPSIIVTANPPPRNVVSTTSVPQNSIA-AKLACSSVAAASPP 194
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 258 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 350
+PR P A H +L S DDV DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149
>12_02_1193 + 26891619-26892456,26892545-26893884
Length = 725
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +3
Query: 213 RQAGQEPLWLYQGDNVPRA-PSTADHPILPSK---IDDVQLDPNRRYV--RSVTNPENNE 374
RQA W+Y G+ PRA P AD PS+ V+L P +R V S ++ ++ +
Sbjct: 308 RQAAGRANWVYNGELPPRANPQKADDEAGPSQKRMRGQVKLAPKKRRVPPSSDSDADDED 367
Query: 375 ASIEH 389
+ EH
Sbjct: 368 DAEEH 372
>05_04_0030 - 17338646-17338669,17338817-17339386
Length = 197
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3
Query: 606 NQKVLIILPQFFLILRRMSSVTVSHINIY-WLGVKXEEALEQAVSLEGTKTAGPL 445
++ ++ +LPQ+F I+ ++ V V I+ W K + AL A++L G GP+
Sbjct: 55 DRSLMWLLPQWFCIIAAVAMVAVFAAEIFPWCESKGDVAL-CAIALAGALLMGPI 108
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 463 CTLEGNCLFQRFLRFNPK-PIYID 531
C G+ LF FLRFNPK P + D
Sbjct: 84 CAPLGHVLFDEFLRFNPKNPYWFD 107
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 131 FAQASCQRFIQPTFSATANTAPDNTYSATSWPGTAMAVSR*QC 259
F +C ++ PT SA T N + +S PGT R C
Sbjct: 101 FLGTACADWVMPTSSAPRQTLSSNIHRNSSRPGTPAPSGRLLC 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,214,949
Number of Sequences: 37544
Number of extensions: 447717
Number of successful extensions: 1233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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