Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP12_F_F16
         (1016 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       33   0.36 
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   2.6  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     30   3.4  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 21/72 (29%), Positives = 22/72 (30%)
 Frame = +1

Query: 202 PPXXKXXXXXKKXDXPPXAXPXXXXXXGXGXPRGXXXXPPGXGXXXGXXXXTPPPXXXXP 381
           PP  K          PP A P          P+G    PP  G         P P    P
Sbjct: 316 PPPPKPAAAAPPPPPPPKAAPPPPP------PKGPPPPPPAKGPPPPPPPKGPSPPPPPP 369

Query: 382 PXGGGXGPPQXP 417
           P G   GPP  P
Sbjct: 370 PGGKKGGPPPPP 381


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 17/57 (29%), Positives = 17/57 (29%)
 Frame = +1

Query: 247 PPXAXPXXXXXXGXGXPRGXXXXPPGXGXXXGXXXXTPPPXXXXPPXGGGXGPPQXP 417
           PP A        G G P       P      G     PPP       GGG  PP  P
Sbjct: 334 PPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGGPPPPALP 390


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
 Frame = +1

Query: 250 PXAXPXXXXXXGXGXPRGXXXXPPGXGXXXGXXXXTPPP--XXXXPPXGGGXGP 405
           P   P      G G PRG    P       G     PPP      PP GGG  P
Sbjct: 201 PRGFPPPLPSPGAGAPRGGSATPAMIPGHPGAFYPFPPPSLPGVGPPRGGGAIP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.150    0.515 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,820,853
Number of Sequences: 37544
Number of extensions: 211594
Number of successful extensions: 464
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2998973440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)